RNA id: AMCG00003686


Basic Information

Item Value
RNA id AMCG00003686
length 4794
RNA type mRNA
GC content 0.56
exon number 33
gene id AMCG00003686
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14426285 ~ 14461583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGACACATCCGGCTGGCAGACTTCGGCTCCTGTCTGAAGCTCATGGAAGATGGAACGGTTCAGTCTTCGGTCGCTGTGGGAACCCCAGACTACATTTCCCCTGAGATTCTGCAAGCCATGGAGGATGGCAAGGGCAAGTACGGCCCGGAGTGTGACTGGTGGTCTTTGGGTGTCTGCATGTACGAAATGCTTTATGGAGAAACTCCCTTTTATGCTGAATCCTTGGTGGAGACCTACGGCAAGATAATGAACCACAAGGAGCGGTTTCAGTTCCCAGCCCAGTTGACAGACGTGTCGGAGAATGCCAAGGACCTGATCCGCCGGCTCATCTGCAGCAGGGAGCACCGCCTGGGCCAGAACGGCATCGAGGACTTCAAGAAACACCCCTTCTTCTCCGGCATCGACTGGGACAACATCCGCACCTGTGAGGCACCCTACATCCCCGAAGTCAGCAGCCCCACCGACACATCCAACTTCGACGTGGACGACGACTGCCTGAAAAACTCTGAAACGATGCCTCCCCCATCACACACAGCCTTCTCCGGTCATCACTTACCGTTTGTTGGGTTTACATACACCAGTAACTGCACTCTCTCTGACCGCGGCTGTTTGAGGGAGTTTGCCAGTCCGGCCTCAGCCCAGATGGACGTCCGAGTGCGGAGGAGTCTGGAGGACAGCCTGGCCACCGAGGCCTACGAGCGGAGGATCCGACGCCTGGAACAGGAGAAACTAGAGCTTAGCCGGAAACTCCAAGAATCCACGCAGACGGTTCAGGCTCTGCAGTACTCCAGCGTGGATGGCCCTGTCTCTGCAAGCAAAGAGGTCGAGATCAGGAGCTTGAAAGACGAAATCgaaaccttaaaaaaacagataGCAGAATCGGGCCAGCTGGAGCAGCAGCTCGAAGAGGCCAGCACGGCCCGCAGAGATTTAGAGGAATCTTCCAAGCACATGAAAGCACTCGAGAAGCAAATGAAACTCACGAAACAGGAGAGGGATGATTTGCATAAGGAGTTAGTGGAGACCAGTGAGAGGCTGAAATCACAAACCAAAGAGCTAAAGGACGCCCACAGCCAGAGGAAGATGGCCATGCAGGAGTTCTCCGAGATGAATGAGCGAGTGACCGACCTGCGCTCCCAGAAGCAGAAGCTTTCCCGGCAGCTCAGGGACAAGGAAGAGGAGATGGAAGTGGTCCTGCAGAAGATTGAGTCCCTACGGCAGGAAGTGCGCAAGGCTGAGAGAGCCAGAAAGGAGCTGGAAGCCAAGGCAGAGGAAGCGGCGGCCGAGGCATCCAAGGAACGGAAGCTGAAAGAACGCAGTGACCAGTACGCCaggcagctggaggaggagctggaagGGCTCAAGCAGAAGCAGGTGGGCCGCTCCCCCGGGGTCAGCAGCTCGGAGCACCACCAGGAACTGACCAAACTGCGCGCCGACCTAGAAAAGAAGACCCTCTTCTACGAGGAGGAGCTCAGCCAGCGCGACCTCCTCCACGCCAACGAGATCAAGAACCTCAAGAAGGAGCTGCGGGATGCCGAGAGCCACCAGCTCACCCTCAAGAAAGAGATCATGATCCTCAAGGACAAGCTGGAGAAAACCCGCCGGGAGAGTCAAAGCGAACGGGAAGAGTTTGAGACTGAATACAAACAGAAgtatgagagggagagggtgctGCTGACTGAGGAAAACAAGAAACTTTCCAATGAGCTAGACAAGCTCACATCCATGTTCGAGAAGCTGAGCTGCAGTAACCgccagctggaggaggagatgagggAGCTGGCCGATAAGAAGGAGTCGGTGGCCCACTGGGAGGCTCAGATCACCGAAATCATCCAGTGGGTGAGTGACGAGAAGGATGCACGGGGTTATCTGCAGGCCTTGGCCACCAAGATGACCGAGGAGCTCGAAGGTCTGAGGAACTCAAGCCTGGGGGCCAGGGCCACAGACATGCCTTGGAAGATGCGACGGTTCGCCAAGCTGGACATGTCCGCCAGGCTGGAGCTGCAGTCGGCACTGGATGCTGAGATCCGGGCCAAGCAATCCATCCAGGATGAGTTGAACAAGGTCAAGGCCTCCAGCATCTCCACTGAGTGCAAGCTGCAGGAGGCCGAGAAGAAGAACCTGGAACTGCTGTCTGAGATTGAGAACCTGAAGAAAGAGACGGATGATCTCAGATTGGAAAAAGGTGTAAAGCACCAAGACTCGCAGAACTCCTTCCTGGCATTTCTGAATGCACCTACCTCTGCCCTGGATCAATTTGATATTGACTCCATTGAGAACTTCAACCTGTCCAACACGCTGTCGCGGGACGAGGAGGCCAAGGCCCACCTGCGCTCCAGGTCCCCGTCCACGGCCAGCGATATGGAGCCCCTTGAGATAATAGATCACCCCCAACGTACTGTACAGACCCCAACAATGAGATCAGGCTACAGTGCGTCTGGCCTTATACCACCCAAGcCCAAAGCCCATCAGTTTGTTGTGAAGTCCTTCACCACTCCAACCAAGTGCAACCAGTGTACCTCCCTGATGGTGGGATTGATACGGCAAGGGTGCACTTGTGAAGTGTGCAACTTCTCCTGTCATGTGACATGTGCGGACAAGGCTCCGGCAGTATGCCCGATTCCCCCTGACCAGACGAAGGGTCCTCTGGGAATAGATCCACAGAAAGGGATTGGCACAGCCTACGAGGGGCATGTCCGGGTGCCTAAACCTGCTGGAGTGAAGAAAGGCTGGCAAAGGGCCATTGCAGTGGTGTGTGACTTCAAACTGTTCCTGTATGACCTGCCCGAGGGCAAGGCATCCCAGCCCAGTGTGGTGGTCAGCCAGGTCATCGACATGAGGGACGAGGAGTTTTCTGTCAGTTCGGTTTTAGCTTCAGATGTCATTCACGCCAACAGGAAGGACATTCCTTGCATCTTCAGGGTCACGGCATCCCAGTTGTCGGCATCCAGCAATAAGTGCTCCATCCTCATCCTGGCCGACAGCGACCAGGAGAAGAACAAGTGGGTGGGCCTGCTGAATGAGCTGCACCGCATCCTGAGGAAGAACAAGCTGAAGGACAGATTTGTCTACGTTCCCAAAGAGGCCTACGACAGCACGTTGCCCCTCATCAAAACTACACAGTCTGCTTCCATCATAGATCATGAGCGGATAGCACTGGGCAATGAAGAAGGCCTGTATGTTGTACATGTCACCAAAGATGAGATCATCAGAGCAGGCGATAACAAGAAGGTCCACCACATCGAGCTGATCCAGGGAGAGCAGCTGCTGGCCGTGATATCGGGCCGCAACCGACACGTGCGCCTCTTCCCCATGTCGGCGCTGGACGGGCGGGAGACGGACTTCTACAAGCTGGCCGAGACCAAGGGCTGCCAGACCATCCTGTCGGGGCAGGTGCGGCACGGGACGCTCACCTGCCTGTGCGTGGCCATGAAGCGCCAGGTCATCTGCTACGAACTGAACAAGAGCAAGATGCGCCACAAAAAGATCCGCGAGATCCAGGTGCCGGGCAGCGTGCAGTGGATGGCCCTATACAGTGAGCGGCTCTGTGTGGGCTACCAGTCGGGCTTCATGAAGTATAGTATCCACGGGGAGGCCAGCCCCGTCAGCCTGCTGCACCCCGAGGACCACACCCTGGCCTTCATCACACAGCAGGGCATGGATGCCATCTGCGCCGTGGAGATCTCCAGCAAGGAGTACCTGCTGTGCTTCGGATCTATCGGCGTCTACGTGGACTGCCAGGGCCGCCGCTCACGGCAGCAGGAGCTCATGTGGCCGGCCGTGCCCAGTGCTTGCTGTTACAATGCGCCGTACCTGTCCGTGTACAGTGAAAACGCCGTTGATGTGTTTGATGTCAACACGATGGAGTGGATTCAAACTATTCCACTGAAAAAGGTGCGGCCGTTGAACACTGAGGGGTCCCTGAATCTCCTAGGCCTGGAAACAATTCggttaatttatttcaagaaCAAGATGGCAGAGGGTGACGAGCTGGTGGTGCCCGAGACGTCGGACAACAGCAGGAAGCAGATGGTGCGCAACATGAACAACAAGAGGCGGTTCTCCTTCAGGGTGCCGGAGGAGGAGAGGATGCAGCAGAGGAGAGAAATGCTGAGGGACCCAGAGATGAGAAATAAGCTCATTTCCAACCCAACGAATTTTAACCACGTTGTACACATGGGGCCTGGGGATGGCATCCAGATATTGAAAGATCTGCCCATGCCAGGGTCTCCTCAGCCCTCCCCTTCTCCTCACCTGCGCTTGATCTCCACCCCCACCAACTTTGAGCACGTCTATCACATGACTGTCCATTCCGCCGAAAACTTCCTCTATCACGATTCCATAAACTTTTCCTACTCCCCATCGCTGGGCTATAACGTCCGTCCTCAGGAGAGCCGCTCAGTGTTCAGCGGGTCTGTGAGCATCCCCTCCATCACCAAGTCCCGCACCGAGCCTGGCCGTTCAATGAGCGCAAGCAGTGGCCTCGGGTCAAGGTCCACTGCACAGAACGGCAGCGCTCTGAGGAGGGAGTTTTCAGGGGGGAGCTATGGGTCCAAAAGGCAGCCCATGACATCCCCGTCCGACGGGTCTTTGTCCTCCGGGGGAATGGATGGCGGAAGCGATGCGCCCATTTCGCAGTTTGAAAGAGAGGACTCCGATTCCCCCCGACACTCGACGGCCTCCAACAGCTCCAACCTGAGCAGCCCTCCCAGCCCAGCCTCCCCCCACAAGACCAAGACCCTTTCCCTGGAGAGCACAGAGCGCCTGGGGTGGGAGACATGA

Function

GO: NA

KEGG:

id description
K16307 CDC42BP; serine/threonine-protein kinase MRCK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2961 lncRNA downstream 4970 14420731 ~ 14421315 (-) True G2447
TU2959 lncRNA downstream 6553 14418578 ~ 14419732 (-) True G2445
TU2958 lncRNA downstream 10612 14415379 ~ 14415673 (-) True G2444
TU2957 lncRNA downstream 16032 14409236 ~ 14410253 (-) True G2443
TU2847 lncRNA downstream 694246 13729447 ~ 13732039 (-) False AMCG00003667
TU3021 lncRNA upstream 237376 14698959 ~ 14699237 (-) True G2494
TU3120 lncRNA upstream 654400 15115983 ~ 15116183 (-) True G2565
TU3188 lncRNA upstream 853813 15315396 ~ 15318210 (-) True G2615
TU3212 lncRNA upstream 916614 15378197 ~ 15378555 (-) True G2636
TU3213 lncRNA upstream 917175 15378758 ~ 15378981 (-) True G2637
AMCG00003685 mRNA downstream 31381 14387555 ~ 14394904 (-) True AMCG00003685
AMCG00003677 mRNA downstream 71752 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003667 mRNA downstream 696587 13664743 ~ 13729698 (-) True AMCG00003667
AMCG00003665 mRNA downstream 864088 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003664 mRNA downstream 911385 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003684 mRNA upstream 15341 14476924 ~ 14483379 (-) True AMCG00003684
AMCG00003687 mRNA upstream 67058 14528641 ~ 14531680 (-) True AMCG00003687
AMCG00003689 mRNA upstream 155880 14617463 ~ 14644456 (-) True AMCG00003689
AMCG00003692 mRNA upstream 544834 15006417 ~ 15016678 (-) True AMCG00003692
AMCG00003698 mRNA upstream 660186 15121769 ~ 15133784 (-) True AMCG00003698
TU2876 other downstream 413264 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 1315157 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 1390796 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 2348133 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 2486502 11923808 ~ 11939783 (-) True AMCG00003623
TU3027 other upstream 349203 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 1054090 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 3480994 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 3685077 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 4963380 19424963 ~ 19425366 (-) True G3517

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU246758 True 976 lncRNA 0.56 5 CI01000051 683662 ~ 688527 (-)