RNA id: AMCG00003688


Basic Information

Item Value
RNA id AMCG00003688
length 1640
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00003688
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14607986 ~ 14617192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgttgtgtctcaTGCTTTCCAGTTTGCATTACTTTAATCGGTTATAAATGATTTAGTCGGTAATAATGCAAAAGTGCTGGATGAAGCAGAGTGAAAGCACCGCGCGAGTCCTAACGCTGCCCTTTAACCCCGTGGCCAAGGCAACGCGTTACCAAAACACGTGTTTGCATTGGCAACCGGCAGCAGAGGAGCGAGGCTGAGCGGCGGCTGAGCACAGGCTGAACACCGCCGTGTCTCTCCCCTTCACACTGAATTGTGCATCTTGATCAAACCCTTAACCGGGCGATGGACTCCCAGACCCTGCACTACGCTCTGGACCTGGTCTCCGGCAGCGGCTTAACCCTGAGCCCCGAGCAGAGGGCGGCCTTGCAGAGCTCCCTGGTCATCATGAGGGCGAACTACCGCTTCCACCGGGTTCTGTTCTGGGGCAAAATATTGTGCACCAAACAGGACTATTTCATAGCGCAGGGGCTCACAGAAGACGAGCTGGGCGAGAAGAAGACGTTGTACAGTTTAAATTGCATTGACTGGTACCTGCTGCCCCCTGCCACTGACACCCTGGTAGCGGAGACATCTGCGGTGAAGGGCCGCTTTGTGGGTGACCCCTCACATGAATATGAGCTGGTGGAGATGAAGAGGCagggggaaggagaggaggccatggAGGAGGATATCACActTAAAATCAAAGAGGAAAATCGTCTTGCAGCAACGATCTTTGTCTTAGACAAGGAAGTGTCAGTTGTACCCAGGGGGGCATTTATAAAGACTCCGCTTGGGCATGTCCAAAGAAACAGAAGTTTTGAAGTTAGACTAAAGAAGAAGTCTCTTCTGGAGAAAGCTGACCTGGATCCATCAATTGATTTCCTGGATTCAATTGAAGAAGACATACCAAAAGGATCATGGAGCCTGCAGTGGGAAAGAGGCAACAGCGTGCTGGTGCTGCGGAGTTTGCTGTGGCTCGGTCTCACTTTCTACCACGTCCCGATGACCCCACAGCACGGGTTCCTTTACATGGGAACCGGCCTGAAGAATCTGGATCTGCCATTCATGTTGTAACAGACAAaactcttattttctttaacctTTTAACAACAAGATTGAGTTTacttgatttaatatatatatttttctgtcctTTTAATAAACATGAAAGTTTGATAGTCAGTTTTGTGAGCATTAAGTATTTCATGGTCCTGTATTATGCTGAAGCTCTAAAGTAATGACTGAACTTTTAGACAGACTTTatataaatgaagaaaaggacAGATTTAGATTATCTAGCCTCACAATATGCAACCCTAACAAAACCTTATTGGAAGTGTAGCATGACACTGACTCAGAGAAAATTACATGTGACCACAAAACCATGAGGAGGGGATTATTGAGGTTCTCATCTAATTAAACTATGCTTGTGTGTCACTAGCAGTCATGGGTTTCATGTGACAACAAACTCTTTGGTGAGAACCTGAGCTTGTCCTGGTGTACAGAGCTGTTTTATTCTAGTAGGAATATTTTTTCTGGTGCATCTTTCCCAAATTTCTGCACTCCCTAAACTAGAACAATAGACAATAGGTTTAAGTTACAGGCAGGTAACTGTGTAATACAGATGTAATACAGTGCAAGTAATTGA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K19757 RSPH9; radial spoke head protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2960 lncRNA upstream 186676 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 528659 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1066832 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1092921 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 1094988 13512600 ~ 13512998 (+) True G2333
TU3032 lncRNA downstream 234560 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 389154 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 497437 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 498513 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 511404 15128596 ~ 15130200 (+) True G2571
AMCG00003682 mRNA upstream 27076 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003681 mRNA upstream 49793 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003683 mRNA upstream 59858 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003678 mRNA upstream 191903 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003680 mRNA upstream 219436 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003690 mRNA downstream 236089 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003691 mRNA downstream 379705 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003696 mRNA downstream 402216 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003695 mRNA downstream 447824 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003693 mRNA downstream 487552 15104744 ~ 15121566 (+) True AMCG00003693
TU2954 other upstream 188254 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1451359 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1565389 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3030657 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3116543 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 1418471 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3064625 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3520563 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3529468 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4751001 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile