RNA id: AMCG00003690


Basic Information

Item Value
RNA id AMCG00003690
length 4118
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00003690
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14851752 ~ 14866758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAGCAGGCGAGATCACCccactggggggtggggggtggaggcCGCACTGTCCCAGTACAAACGGCTCAGTGTGCTCCCGCACCCCGGGCCCCCCGCCGTGCCCTGCGGCCCCTGCCAGCAGCCTGCGGGATCCGGCCAGAGAGTTTCAAAGCGGTTGGCAACAGCCCACATACCTAAAGAAGGGGAGAGGCATCCGAATGAAGTTATACCTTTCCTGGATGTGTACAACAGGAGCTTCTGCCAGAGAAGAGAGCTATTAGTGGATATCTTTCAGGAGTATCCTGATGACatcgaatatatatataagccttCATGCGTACCTCTCATGCGATGTGCAGGATGCTGCAATGACGAAAGTTTAGAGTGCGTTCCCACAGAAACGTACAATGTGACAATGCTGATAATGAAAATCAAACCCTTCCACTTTGAAAAACCGGTACAAGTGAGTTTCACAGAACACAGTAGATGTGAATGCAGAATAAAGAAAGAtgttcaagaaaaaaaagaaaaaaaatcCAGGAAAGGCAAAGGCAAAGGcctaaagagaaagaaaaagaaaaaccgaGACAAAAAGCCCGACTCGTATGTCAGCTGTGCATTTTCCACGCCACAACTGCATTTGAGCATTTCACTCTTGATTGTTAAGTTAATTTGGGAGGAGGTTGTTTATGTCTTATAATTCACCTTGATCATGGCATGAGGCTTTGTCACGTGGTTTCCACACGTCTTTAATCCACTAGAGTGAATTTGTGGCACTTGGTCCCTAAAAGTGAAATTAGAAGGTAATGGCATCACTGAGCATGGCTTTCTGATGACGATACTAATCACAAACCTGGTTTGAATTGAATTGCGTATTTGTTTCTAGTGTCTTTTTAATGGCCTGCACGTATTACTCTATAAAGTTTTCTTTTAGTGCAGAGCTAGACACTGAAGCAAGacgtattgattgattgatattttTGTTGTGGTGGTAGAATTGGTATATTTGGGAAGACAGGGTTGCAATAAGCATGCTATAAAATAACAGGGCTTACAGTATACCATCTATTGTTGatttataaaatcatttttttgttctggtttttgaacaataatataattcacTTTGGGGAGAAAATCAATTGGTCACGCAAGCCTTCTGGCCCATTATATGGCTCTAAATGAGCAGATCAGATCAGAAAATGTTGGATAAACATTTGCATGTTCATGATCTTTTGATATTCAAAGCTTATTCAGGTCTATAGACCTACACACTGGCCTCTGTAACCCTACTCCAAATTTACGTATTTTGAATAAAGGTGCTCAAATGTCCAGTAATACATAATGTTCAGGTTCTTCCTATGTTCTTGTATtgcactgtttgtgtttttcaaacagctgtatttctgttggttgttttatttttatttgaaactgtggaaaaaaaaaatccaataaaagATACTGCATCTTTAAGCACCAGATActttgggttttatttaaacaCCTGCATGGATACTTTTTGTAGGAAACAGgatatgtatttacttttctccaagcctACACTTTTCAATTTGGTTGTAACTTCCTCCATTGTGAGAAATTAAGAGATCAATTTGTTTACAGTTCAATGTCCAATTGCCACATTACTCTTCACGCAGATTGTTATTGTCACAATTGCATGCTTGTGGGCAAATATACATCTTCAGACAACGTTTTGTGTGAGAAGGTCATCAACAAAGTGACTGCTTTGAAAGAGCACAAGAATATATAAGGGGGGAAGAAAGCAGGTCCTGGGCATTTTGGGTGTCTGATGTTTTGGTGCTTTTGAGATATGCCCTTGTGCGAAACCCTTACAAGTATTTGCTACTAATACGTCAGGAAATGGATGCTTTGTATTTGCAAGACTATTATAACAATGTGAGAGGTCACACACTTCACAATCATGCACTTTagctttttaaagaacaaatacGCACAGCTATATGATGTTGACTCAGACCACTCCACTGACCTCGCTCTGCTGAAGTTAGTGTGCCTGTGTACAACTACTCCACCAGGCACGCTGAATCACCTAGCTCTCAGCTAACATgttttacaaaactgttaagcacaaaaaactaaaacaaacaatgaataTCCTTATCCTTTTGAATGAAGTCCTTACATATGTGTTTGAGTGCTGCAGGTGCTTAATTCAAAAtctaaagcaaaacaatacaaataaaaagctaaaGGAGAATGATGTGGAGACTGTGCCCCTCAGGTCAAAGTACAGTGGCTTTGTTAACTTCTTCAGTGGAGAAATGTGACTGCCCCCTCTGCTCGCTCTCATCACAAGGTCTGCTTGATATTGTAGGGGGTTGCAtgtgttgtttctctctctgctaaAGCGCTATAGCTTAgacctctttttttttccttttttgcctTTTTGCAGCCACTGTGAGCCTTGTTCAGAGAGAAGAAAACGCTTGTTTGTACAGGATCCCCACACCTGTAAATGTTCCTGCAAATTCTCACAATTACATTGCAAGTCCAGACAGCTTGAGTTAAACGAAAGAACTTGCAGgtGTGATAAACCAAGAAGATGAGAGGCGGTGAAATGGACATTGAAATGAAGGATATACATAGCACAGCACTTTGAATTCTGATCATTGAGGATGCATTCCTTGGAAAGATTGTTGAAAGAAAATCATCCCATTGTATATTTTcgaaatattaatatatataaagagatgTGAATTGCTGCTAAAACATCAGCCCGGCTGGTGCTTGAGATGTCTgggatttgttctttttttttaaagaaaaaaaaaagattaattttatATTCTATTTCACTGGATATGGGTCTGCTGTGTACATAGACAAGGCAACAAGAGGTACATGAACCGGACACTGAGTACCTCGATCTTTCAGGAGTAATGGCTGCATTCAAGTTGGGAAATACAGAAAACCTACCAAGACACTTTCAGAAACATTCAAAGGTCCAAAAACATGTGGAACGGTGGAATTCCCTTGATCATTTCACTGCCTGCTTCTGTGAAGTCCCAACTGCAAGTCTGGAATCCGGATGATAGACAAGAAGGCAACTGTTGTGACTAACATCCAATAGGACAAAAGCATCTATTTAAAAGGGATATTAATTGTAGGTATATATAGAAAGATTGACACTAAATTACTTGATTCCATATTTTACCAAGGCTCAGTAGCAGTAGCTATGGTGAGGCCTCTGTGACTAGACTCCTTTAACtattaaattattactatttttccAAAGACAACATTGCGCACACCATtaagaataatattaaaagaaagagcaaaatctgtatatacatacttaATATCCCTTTCGTAGACAATGTAATAcagttaatttataattttagaaTATTTCAGTATTCTTTGTGTATTTAAGTTTATCTATTTATATGCAGTGTTACATtcaaaatgtcttgtttttctgaaaatatcATTGATGCCAATCAGCCCAGCTGCtccaactaaacaaaaaaatgtaaatggcctttttgtttaagaaaaaaaatacttcaacattcctgaaacatTTTTAGTAATGCCTGGTATTCTCCccaaagctttttaatttttatttctgtgtaatATGATCGGACAGTTTATTATCAGCTGACAAAACCTAGGCTCTCTTATGGATCTGATGCATGCTTCATTTGCAGATTATGCATCTGTGTCCAACAGTACTTGCTTAGACTCAATACGCTTAATCCAGTAATTGAAGAAATTGTCTACTGTGTATACAGTTTCTCTTTCTAGGCAATGAACATGTTGTATGGTGTACTGCTTGTCTTGCAAACTGCATGCCTGTAAACTAACGCAAAACTAAGGTATGTACCAGTTGCATGAGAGAGCTTGGGTTTCGTGATTGGCACCACAAAGTTAATATTACATTCTATTTGTATTGAACTGCTTTGTGTATCCATATTGTACAGCCACAGTTTTAGTATATTTTTTgtcacattaatatatttattggtgCTGTAAAGTGGTAAGTTTTAATATtaacatctgttttgttttagtgtaactagtataaacatatttattttcaaattatattgttttttattaaagagAAAATTGACTTTGAAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0048793 pronephros development biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0048844 artery morphogenesis biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0051894 positive regulation of focal adhesion assembly biological_process
GO:0030878 thyroid gland development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0043491 protein kinase B signaling biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0035477 regulation of angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005576 extracellular region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2960 lncRNA upstream 431971 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 773954 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1312127 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1338216 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 1340283 13512600 ~ 13512998 (+) True G2333
TU3058 lncRNA downstream 139588 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 247871 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 248947 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 261838 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 443563 15310321 ~ 15318228 (+) False AMCG00003702
AMCG00003688 mRNA upstream 236089 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003682 mRNA upstream 272371 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003681 mRNA upstream 295088 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003683 mRNA upstream 305153 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003678 mRNA upstream 437198 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003691 mRNA downstream 130139 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003696 mRNA downstream 152650 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003695 mRNA downstream 198258 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003693 mRNA downstream 237986 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003694 mRNA downstream 277864 15144622 ~ 15156393 (+) True AMCG00003694
TU2954 other upstream 433549 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1696654 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1810684 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3275952 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3361838 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 1168905 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2815059 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3270997 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3279902 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4501435 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile