RNA id: AMCG00003691



Basic Information


Item Value
RNA id AMCG00003691
length 1090
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00003691
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14996897 ~ 15005277 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgaccCTATGCAAGAAGTTAGAATCTAATCTGTGCGGACAGCTACTTCTCAACTTGAGGGGGACAAACTGGGAGGCAGAGACAGTGGAGGTAGACAGGGAAGGTCTTTTGGGGGCTCAGCGTGTTCGAGTGCTGGTGATCTCCTTTGGCTGCCGGGAGGGAGCGCAGTACTGGCTGCAGGAAACAGGCTGCAAATTTGACATGCTGCTGGACTCAAAGCGGGAGGTTTATAAGGCGTTCGGCTTGGGAATGTCTGTCTCAAAAGTGTGGAGCTACAGCAACTTGTTCCACTATGCTGAGTACATGGCGGAAAGCAGACAGTTTCCAAAGACGCCTGCAGATATTGTGGATGACATCTATCAGTTTGGGGGTGATTTTGTCTTGGACCAAGCCGGACGAGTGATTTACTTCCACCCCAGCAAGACTCCTGCTGACAGACCTGTGGTGACAGCGCTATTGGCAGCCATTCATGAAGCCGGCCCCTCCCCACCCACAGACACGCCCACGTGACCGCCTGGTGCTGATACGGCAGAGAAAGACGCACCTTCAGCTTGTGTCGATGAAAACAGAGCTTGAACTCATGTCTTCATGAAGAGCTCTGTTGGATGTGCCTGAACAAGCCAAGGCAGACGTGTTTCACTGGAAAACAATTAGtctaaataagaataaaacattaGGAATAATTAAGGGACATTATAATGATTCATTCCCATTACAATGACACTAAACTGCAATCAGGTGATGCAGCGCAAAGCACGTCTTAAAGTAATGAACTGATTAGGTAGACTGTGTCATCATTAATTCTTCAAGTAACTCTTTCATTCCTAATCGTGTTAATTGAGTTTAATCTGTATATTTTGATGGTCAGTGGTGTTTTGAAGTGGTGTccagaatataaatattaatactatAGGGCACTTGGTTGATTTAACTGTTTTACCataagttttatatttaatgctgAAGACTACTGGGTGTATGCAGTAAAACACCTGTTTGGGTTGATAACTGAATAAAGTGCAAgatgttattgttgttgattgGGTTACATTCAtccttgtttgtgtttaataaaaagaCGCTCTTCGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3032 lncRNA upstream 130199 14851752 ~ 14866698 (+) True AMCG00003690
TU2960 lncRNA upstream 575587 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 917570 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1455743 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1481832 13514660 ~ 13515065 (+) True G2334
TU3058 lncRNA downstream 1069 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 109352 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 110428 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 123319 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 305044 15310321 ~ 15318228 (+) False AMCG00003702
AMCG00003690 mRNA upstream 130139 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003688 mRNA upstream 379705 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003682 mRNA upstream 415987 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003681 mRNA upstream 438704 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003683 mRNA upstream 448769 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003696 mRNA downstream 14131 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003695 mRNA downstream 59739 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003693 mRNA downstream 99467 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003694 mRNA downstream 139345 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003703 mRNA downstream 249779 15255056 ~ 15289576 (+) True AMCG00003703
TU2954 other upstream 577165 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1840270 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1954300 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3419568 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3505454 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 1030386 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2676540 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3132478 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3141383 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4362916 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile