RNA id: AMCG00003694


Basic Information

Item Value
RNA id AMCG00003694
length 3461
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00003694
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15144622 ~ 15156393 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAATATTCCAGAAAACGATAACGTCCAGACTAGACATCTGTCCCCTATCAAAGAAGAAAGTGCTGAGCAAGGCGAGCAGATTTGTCCTGTCAGCCCATTTGGGATACGAAGGAGACGTTCTGTTCACCCCGAGGACAGACCCATAAGACCCATAGTTGGAGTGAAAAAGAAGACCTTTGAGGAGTTTGTTGAAGAGCAGCTGAAAGTGGATGAAGAAGTTCTTGAGAAAGAAAAGCAGGAACTGAAAGAATGTAAGGAGTCAGGAAGAAAGAATTTCCTGAGGAAGGGGGAGGGTATATCTCGGATAGAGAAGACCAGGTTTAACGCACttagggagaggaggagagcatCACTGTGTCAGATGCCCAAGCAAGTGAACTTTGTCAGCCAGCACAGGCGCTCCCTGCCCACCCTGCAGGACTCTGATACAGTGGGGTTGAGGAAGATGACTCCCTTAAACTCTCAGGTCAGCAGTCCTGCCATGATGGAGTATAGAGAGAGAAGTGTTCAGGCTGCCAAAGCAGACGCCTACAGCAGCCTTCACCGCACAGCCGAACTGGAGCAGCGTGTGGGGAAAACAACTGCAGCACAAAGTGGATTAAAAGATAACACGAACAAGAACAATACTGGGAAAAGAGGGGTATTAGATCAAACTCCAGGCAAGAGGAGGACCTGGAGATCCAGAAGCGCAAGTCTGTCATCCTTGGGAATCTCAGACACCGTGGGGTTCCACTCCCTCCTGGGTGTCGCGGAAAAGGACAGTCACTCGAGCCCCTGGACACGACAGGGAGCCGAGCAGCCCCTAGCAGCACAAGCCCCCGAGAGCGCGGCCGCCTTGAGGGATGGACGCCAGTCAACGGAGACTGATAAAATGGGACCTGGTCCCGAGTTTAAAAAAGTCAACGACCGCATTGTCCGGGTTTCTGACGGGGCGGACCTCTCAACGCACAGTGGCGGCGAGAAAAGCGTAATCCGGGCGAGATGTGGGGCGGGCAGGGAGATACACACCTGGAGGACAGAGGAGATGCAGTTCCAACCTCCCAGCAGCACCGGGGACAGTACCAGCAGTGAGGTCGACCCCAAGTCTCAGTGCCATGAGCAGCCCACCCACCAGGCCCCTCTCCGGCTGGGACACACCGACCGCAACCTCGACCTGTCAGAAGATGACTATGCCAGCGATGCCCCGAGCGGGGGGGAAGAAGCGGCTTCCAGACCCCAGACTCCTCACCGATTTTCTCTTCTGCATCAgatctccagcagcagcagcaccagcacaAGTGACAGCAGCAGCGATGAACTCAGGAGCTATAACTGGCACAAAAAGGCAGTAGCTTCTCCACAGCACAGGTCCCCGAAAAAGGAGCTGACAGACAAGAGAAGGACACCATTTCTACCTGGTAACGACAGCAGCTGGAAAGCCAATATTAAACCTCCTTCCACTTCTGAGCTTGTGGCAAGCCTGTTCCCTGGattaaaaacaagagaaaaggACACATCCCAGAGCAAAGAGACAGGGGTATCACAGCAGCCTGAAGACAATCAGTATGAAAATCCAAGACATCAGGAGTTAAAAGCAGAGATGGAccacagtgcagtgctggaCAAACTGAAAGAGGAACAAGAGAAAGCCCTCCAATTTCTAAGGAAGAAAATGACTGGACTTGAGCAAGAAAATGGAGAGCTTGAACTGAAGGAGCAGATGAAGGCCTTGCAGGAGGAGCTCAAGCAGCGCGAGGATCGCTGGTCGGCCGCTCACGGGCAGCTGACGAGCCAAGTGGTGGCGCTGACCAGGGAGAACGTGGAGCTGAGAGACGAGCTGAAGGTGTCAGAGAAACACCGCCAAGAGGCCTGGAGGTCTCATGATATGACACCGAGGCCCAGCCGGAAAGCAGACACCCCAGTCTCCGAAGCTATACTGATAGGCACTTGTCAGCTGAAGAGTGAAGACAGGCCTGCCAGCTGCTCCGGGCGCAGTGGTGCTCCGGTCGGGAGGAAGTTACAGTTTGAGAGGCCGCTTTCAAGCAAACCTGAGGTCAAGGCCATCCAGCATATTAGTGCTGAGGTCCAGAGGGCGAAGGACAGGAGATCTCCGTTCCTGAGCCAACATGTTTCTGCAGGGACAGAGGTTTCATCTACATGTGGCCACTCTTCACATTCAGCCAGTTCAGAGGATCCTCACAACCCCGACAACCACGACTCCAGACCACAGAGCCGCAGCCGCGACAGGTTTCAGGAAACAAGAGGACAATCCGGGGTTTCCAGGGGAGTGTCACCCTACACAGGGGTCAAGGGTGGTGATGATGAAGTTGTGGAAGAAACACACTACCCAGATGGCAAGAAAGACCAGCTGTTCTCAAGTGGCCGACGCGTAATAACCTTCCGCAACGCAACAAGGAAGGAGATCGGTATCGACGGGAAGTCTGTGACAGTCACCTTCTTCAATGGGGACATCAAGAAAGTGCTCTCGGATGAGAAGGTGATTTACTTTTATGCCGATGCACAGACAACGCATACCACTTATCCGAATGGCCTTGAGGTCCTGCAGTTCCCCAATAACCAGATAGAGAAACATCACCCAAATGGTACAAAGGAAATCGTTTTCCCAGACCAAACAGTCAAGCACCTCTATCCCGATGGCCGAGAAGAAAGCGTTTTTCCTGATGGCACAGTGGTGAAACTAGCAAAGAACGGAGAAAAGACGGTGGAATTCAGCAACGGGCAGCGCGAGATCCACACCTCACAGTACAAGCGCAGGGAGTATCCAGACGGAACAGTGAAGACTGTTTATTCAAATGGAAGACAGGAAACCAAGTACTCTACAGGCAGAGTGCGCATCAAAGACAGAGAAGGCTCAATTATCATGGACAAGAAATGACATGCACAAAAATTAGGGCAAGGGTTTTGAGTTTTGTGAGATACGTTTTTCTGTATGCAGTGCTAAACTCAAATACAGTACCACAACATTTCTCCCACTAAAACTATCCTCAGACTATCCAAATGACTTGAAAAGGTTTGAGGAATCAGTATTTCTTCTAGAGGTAAGATGTCTACAATTCCCTAATTTATTTGTTGACATTATACCTATTAATATGTGAatatcagataaaaaaaaattacaggcGATTGTTGTTGTAGtcataaattatgtatttttttactgtgaATAGCATATATGGGTTACATACAAGATTgtatacttattatttttagtaccttttgtttattcatgtcaGCAGTTTCTAATGAAATATAGCTGCTTTTCAATGAAGGCATTGATGTGCAGAggctctctatctctctctctctctctctctctctatatatatatatatatggtgtttATATTTAATGGATATTTCCATGTTGGAGTGATTGTtgtataaattaacattttataataaataatgaccaTGTATTTCATTTAACCATATATCAGCACACAATTATAAAGCATTTCAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3126 lncRNA upstream 14422 15128596 ~ 15130200 (+) True G2571
TU3119 lncRNA upstream 27650 15115705 ~ 15116972 (+) True G2564
TU3118 lncRNA upstream 29785 15114629 ~ 15114837 (+) True G2563
TU3058 lncRNA upstream 114254 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 277924 14851752 ~ 14866698 (+) True AMCG00003690
TU3159 lncRNA downstream 153928 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA downstream 153928 15310321 ~ 15318228 (+) True AMCG00003702
TU3193 lncRNA downstream 216802 15373195 ~ 15377637 (+) True G2619
TU3217 lncRNA downstream 260583 15416976 ~ 15419869 (+) True G2641
TU3260 lncRNA downstream 748090 15904483 ~ 15904820 (+) True G2681
AMCG00003693 mRNA upstream 23056 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003695 mRNA upstream 48098 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003696 mRNA upstream 90251 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003691 mRNA upstream 139345 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003690 mRNA upstream 277864 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003703 mRNA downstream 98663 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003702 mRNA downstream 144687 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003705 mRNA downstream 177608 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003701 mRNA downstream 197085 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003706 mRNA downstream 238420 15394813 ~ 15398406 (+) True AMCG00003706
TU2954 other upstream 724890 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1987995 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2102025 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3567293 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3653179 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 879270 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2525424 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2981362 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2990267 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4211800 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile