RNA id: AMCG00003695


Basic Information

Item Value
RNA id AMCG00003695
length 4823
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00003695
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15065016 ~ 15096524 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGGCCCTAGTGGAGGCATTGAGAGAGGGACCAGGCACTGCGGACATGACCACCTTCGATGACATCTTGGAGGAGGCTGGGAAGTTTGGGAGGAGCCAGAAGCGCGTCTTCGGGCTGCTGTGCCTGGTGTCAATACCCTGGGCTGGGATCTATGTCGGGATTGTCTTCCAGGGCTTCACGCCAGAGCACTGGTGCCGGGACGCGCGGCTGGAGAAGCTGAGAGAGCGCTGTGGATGGGGCCTGCAGGACACCAAGACCTACTCCGCACCCCTGGTGAACACCTCGGGGGGTCTGATGCACAGCAAGTGCGAGACGTACAATGTGGACTGGAACCAGACTGCTCTCGTCTGCCAGCACCCCCCGGCCAACATGACGGCAGCGTCTTGGAAGAACACGGCACTCATCTCCTGCAGGGATGGCTGGGAGTTCGACTACGAAGGCAGGTCTTCATTCGTGACCGAGTTCAACTTGGTATGTGAAGACGCCTGGATGGTGGATCTCTTCCAATCAGCTGTGAACGTGGGGTTCCTGGTGGGCAGTATTATTATTGGATATATGGCAGACAGgttCGGCCGAAAGATCAGCTTTCTGATGTCCAATCTCTTCAATGCGATAACAGGAATTCTGGTGGCTGTCTCTCCCAATTACATCGCCCTGTTGGTTTTCCGAACACTGTATGGACTTGGTGTCAAGGGGGGCTGGGTTGCTGGCTATGTTCTCATTACCGAATTGGTGGGAGTGGAGTACAGACGGACAGTTGGAATCCTCTACCAGATGTTCTTCAGTATTGGAATCCTAATCCTGCCACTGGTTGCTTACCTCATCTCTGACTGGCGATGGCTGCAAGTGGCTATCACCGCACCTTACTTTGGTTTCTTAGTCTATTACTGGTTCATTCCTGAGTCGCCAAGGTGGCTACTGTCCCAGAAGGAAAACAGCAAAGCTGTGACTATCACAAAGGCAATCGCTAAAGAGAACAAGAAAACACTATCCAAAAACCTGGAGACTCTCACAGGTGACAGTGAGGAGATTTCGAAAGTCTCAGTCCTTGACTTGGTCAGAACTCCGAAGATGAGGAAGTACACACTGATTCTAATGTTCAAttgGTTCACAAGTGCTGTGGTCTACCCAGGCCTCATCATGCGTCTGGGGATCCTTGGTGGCAACATTTACATAGACTTCCTCATCTCGGGAATGGTTGAATTCCCTGCTGCATTACTCATCCTGTTCACCATTGAGCGCATCGGGAGGCGTGTCCCATTTGCAATGGCCAACATCGTGTCAGGGGCAGCCTGTCTCATTACTGCTTTCATACCCGAGAgtgttttcTGGCTTAAAACGGCAGTCGCCTGCGTGGGCAGGTTAGGTATTACGATGGCCTTTGAGATGGTGGTGTTCGTCAATACAGAATTATACCCCACGTTTATCAGGAACCTGGGGGTGTCTGTGTGCTCCACGTTCTGTGACATCGGGGGAATTGTGGCCCCGTTCCTGCTGTACCGGTTGGCAGTTATATGGATAGAGCTGCCACTCATAATTTTTGGAGTGCTGGCCTTTGTTGCTGGGGGCTTGGTCTTTATGTTGCCTGAAACGAGAGGCGTCCCCTTGCCAGAAACAATAGATGACATTGAGCACCCCTATAACTATCTGGACACAATGCCAACTTTTGATGAGCTGTTAGTGGACGTGGGTGAGTTTGGACCTTACCAGAAAAGGGTTTGTCTACTGGGGTGCATTCCAGGGATAttatttgccttttcttttgtggggATTGTTTTCCTGGGGAACACGCCAGATCACTGGTGTCGGAGCCCAGAAGCGGAGGAGATCCAGCAGCAGTGTGGCTGGACGCAGGAGGAGCTGAGGGCGTTTACAATCCCCCAGTCCAGCCAGGGCGCCTACAGCCAGTGTGAGAGATTCGATGTGGACTGGAACAGCACTGAGCTCAATTGCAGCCGCCCACTGCCCCTCTCCTCCACCAACTCCACCGAGCGCCTGCCCCTCACCGCCTGCGACAGCGGCTGGCAGTTTGAGGAATCTCGCTCCACTATCGTCACTGAGtttgaCCTGGTATGTGAGGACGCATGGAAGGCCGATCTCAACCAAGCTTTTCTCAATGCGGGTTTTCTATTGGGAGCCGTGGTCATAGGATATGGAGCAGACAGGTTTGGCCGGAAGTTGTGTTTCCTGATCTCCATTTTCGGGTTGGGCATCTCCAGCGTAGGATTGATTTTTTCCCCAAACTACAGCTTGATCTTGTTCTTCCGCTTTGTCCAAGGCATCTTCGGGAAAGGAGCCTGGATGTCTTCGTATGTGTTGGTGACTGAGATTGTGACCTCCCAACACCGACGACTGGTGGGAATTGTGTGTCAGCTATTTTTTACTTTCGGTGTCATCATCCTGCCTGGAATTGCTTATCTCATCCCTCCGTGGAAGATGCTACAACTCGCCATTACTATACCATCCTTCCTCTTATTAACATACTATTGGCTGATGCCGGAATCTCCCCGTTGGCTGTTGACAGTTAACAGAACCAAGGAGGCCCTGCGCATCGCTGAGAACATGGCCAAGCAGAATGGCACCCAGCTGCCGGAGAAGTACAGCACTGTGGAACTGCTGGAGACTGTCCCAGAAAAGACATATATCCCTTCCCCTTTGGACGTGTTCAGGACTCCACAGATGAGGAAATTTACACTGATCCTAATGTATGCCTGGTTTACAAGTTCTGTGGTCTATCAAGGGCTTGTTATGCGCCTTGGAATAATTGGAGGGAATCTGTATCTTGAGTTTTTCATCTCTGGAATTGTGGAGCTGCCTTCGGCCTTGATTTTCTACCTGACCGTGGACAGAGTGGGGAGACGGATTCCCTTTCTCTTGGCAAACATTGTGGGAGGATTGTCATGTTTAATAACTGCTTTTATACCAGATGatATCACTTGGCTGAAGACTATCATAGCAGTCATTGGAAGACTTGGAATAACCCTGGGGTTTGAGATTGTGTACCTGGTCAGTACTGAGCTCTACCCCACACCCTTAAGGAACCTTGGAGTCTCCATTTCTTCTTCACTCAGTGATGTAGGAGGAATCGTAGCCCCTTTTCTGCTGTTCAGGCTGGCAAATATTTGGATAGAGCTGCCAATGGTTTTATATGGAGTCATGTCCTTGATCTATGGTGGTTTAGTGTTGCTTTTACCCGAAACAAAAGGTATTGATCTACCAGAGACCATTGAGGATGTAGAGGCTTTAGGAAGGGCCACCAAAGCTGTATTGGACACAAACAAGAGAAAGGCTAAAGATGGGATCATCTGACCAGAGGGGAACAAACTGCATGGTTTAGCCGATCCCAAACTCAGGAAATTACATTTGAGTCGGGGGAACACAAGACTTTGGAAGAAAAGTGCTAGATCTCAGAGTGGACCTTCCCTTTTCTAGAGATAGTCAACTGCATTGGATCAGTGCTGCTTATCCAGTATGGTTACTCGGTAACAAGTAACCCATCTTGGTGACAATCTATATATTCTCAGTCTGTGAACtttacaaaactatttaaaatagtaataagaataattatatGAGTTTTAACCATTTGAACATTGACTTGGTTATTCTGGTGCCTTTATTATCCATGTTACCAAAGTGTTAATGCTGTGTATTATTTCTCCTAAAGTATtggacacacaacacagaccagTATTCAAAAGTCTTGTACCATTCAATaggtaaaagaaaacacaaataaatgtaattagaaCATTGTACCTTTATGAATTAATATTGtacattgatatatttaatgGATAAAGTCATATTTAGCTTTTGTACcacattgaataaatactgCTGCACACTGTACAGTTAGAGGATATTATGTATAGATTCCTCTGTAAGTAATATAATGGCTTTGGTCATGTATGTAAATGCATAACATATTTCTTATGTTAGATGCATATAAAACAACTTCAGGACATTTGAACCTTTAGCTCTGTCTCAACACAGTAACTCTTACACTGAGAAGCACAACCAGAGAATGACAAATCTCAAAACAAGTTAAAATTGTAGATGCTGAAAACAAAGTTTCAAGTTGTGGATCACTTTGTTTGCTTGACATTGTATTGAGTATAGTTCAGATAAACCATAGTTCTGATTAGAAGACAACAATCACTTAGAGCTGTAATGTAGGGTACAGATGACAATTCATTTATCAGGTGGTTTCTGAGCTTGATCTTAGATGCCAGGAGATGTCTTGACCTGTTGACCTGTGCTCTTAGGATGTAGGATATCTTACTTCCCTCTGTGACCTGCACTAGAGAATCAATAGATCatagtttttgtctttttaattgtgtCTTTATGTACTAAATGTAAATAGTCttccaaaaaaacacaataaaaaatgcttttctgtacaaacaaatcacattgcATCTGCAACTGATAGATGCAGTGTTATTTATCCTGTGAAAAAGTAATCTGGTTAATCTCCATAAAAGGCCCATATTTAAGTCTTTGGTGTCTGTTGTTATGCTGTCTAAAGGTGCTGAATGTGGATATGACACCTAATGGGAAAATACTTTTGTATGAGACAAGATGTACTAGATCCACAAACAGGGTGGGAGCGAGCACAGAGAAgcagatttgtgtgtgttgtggttcTTTGGTCAACAATCTGGGGTTTCATTATCATCTGTGTGATTGGTTAACCCTTTTACATCACTGCCAGGAACAGAACAATATTGATTACATACCTAATAAATTCTGCACTATTAACCTTTGTTTCATGCCCTACAATTCTTGAAGTCCATTTCCACATGTAGAAATGT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
K08200 SLC22A3, OCT3; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3058 lncRNA upstream 34648 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 198318 14851752 ~ 14866698 (+) True AMCG00003690
TU2960 lncRNA upstream 643706 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 985689 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1523862 13539972 ~ 13541154 (+) True G2336
TU3118 lncRNA downstream 18105 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 19181 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 32072 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 213797 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA downstream 213797 15310321 ~ 15318228 (+) True AMCG00003702
AMCG00003696 mRNA upstream 10645 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003691 mRNA upstream 59739 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003690 mRNA upstream 198258 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003688 mRNA upstream 447824 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003682 mRNA upstream 484106 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003693 mRNA downstream 8220 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003694 mRNA downstream 48098 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003703 mRNA downstream 158532 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003702 mRNA downstream 204556 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003705 mRNA downstream 237477 15334001 ~ 15334318 (+) True AMCG00003705
TU2954 other upstream 645284 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1908389 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2022419 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3487687 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3573573 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 939139 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2585293 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3041231 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3050136 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4271669 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile