RNA id: AMCG00003696


Basic Information

Item Value
RNA id AMCG00003696
length 5895
RNA type mRNA
GC content 0.54
exon number 40
gene id AMCG00003696
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15019408 ~ 15054371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCTCGCCGCCGCGCTGGCGCTCCTCTGCGGCGCCGTGGGGGCGAGCGAGCGGCCGTGGTATGAGGAGCTGTGCAGGTTCAAATGGGAGGCTATAGACACAGACGGGAAGGTGAATTACTCCATAACGCTCTGCGAGGCCTCGCCTGTTAACAGCTGTGGAAAAGACTCTGTCGTCTGTGCCTATGATGTAGCATCCAAGTGGCATTCTGTGGGTGACCGATCTCAGCAGCTGTCTTCTGATTATGTGCTTGGGTTTAACACAAGTCAGAAATGCTCAGAGCCGGGCTCCAAACAGAAGGTTCAGAGCAGCATCAGCTTCCTGTGTGGGAAGACCATGGGAACACCTGAATTTGTGACCGTGTCTGAATGTGTGCACTACTTCGAATGGAGGACATATGTAGCTTGCAAGAAGGACAAATTCAAGCCCCATTCAGAGGTGCCCTGCTATGTGTTTGACACTGATGGGAAAAAGCATGACCTGAACCCTCTGATCAAGACCATGGAGGGTTACTTGGTGGATGACTCGGATGCTGATTCTGACTTATACATCAACATATGCAGGAGCATCAGTAAGTTTGCCTTGCCTAAATCCAGTTCTCAGCTGTCCTGTCCTGAGAACTCGACTGCTTGCCTCAAGATGAACAACAATTACTACAGTGTTGGCCAAGCCACTGAAGCACTACAGCTGGCTGATAAAGACAGACTGGTGCTGCACTATGGCTATTCAGGCCCGAAGCTGGATTTCTGTGGGACTCACACTCCTGCTGTTACCATTACCTTCATTTGTCCATCAAAGAGACAGGAGGGCAGTGACCCCAGACTGACGGCGAAAGCAAACTGCCGCTATGAGGTGGAGTGGGTGACCGAGTACGCCTGTCACAGAGATTACCTGGAGAGCTCAGACTGCAAGTTCACCAGCGATCAGCACGACATCTCCATCGACCTCAGTCCTCTCACCCTTCCCGCCAGTTCAGTAAACCCATACCAGACATCGTCCCACACCAGCGATGGCATAGATGATTACGTGTATTACCTTAACGTGTGTGGAGAAATCAAGAGTGGCGGCTGTGCCGATACCAAGGGCTTCATCTCCTCCTGCCAGGTGAAGGCCGACGGCAGTCTAAAGAAGGTTGCAGGGAGATATCAGAACCAAACTCTAAGGTACTCTGACGGAGATCTCACCCTGATTTACCCTGGGGGGAATACCTGCAGCTCAGGCTTTCAGAGAATGACCATAATCAACTTTGAGTGCAACCAAACAGCTGGTAATGATGGGAGGGGCTCGCCGGTGTTCATTGGCGAGACGGACTGCACGTACTTCTTTGACTGGCAGACTGCGCATGCCTGTGTGAAAGAGAAGGAGGATCTTCTGTGCCGGGTCACAGACGGGAAGAAGCACTACGACCTCTCGTCTTTAACCAGATATTCAGagtcGGGGGCAACTATGAACTGGGAGGCAGTGGACAGCAGTGCGGTGGAGTCGGACAGGAAGCACTTCTACATTAATGTGTGTCACAAGGTCATCCAGGAGGAAGCGACCAGCAGCTGCCCAGAGGACACTGCGCTCTGTGCTGTGGGGAAGGACAACAAACCAAAGAGTCTGGGAAAATTTCTCTCCTCACCCAAAAaagatgacaataataatatcctGTTGACTTACACGGAGGGGGACGAGTGCAATGGCAAAAGCAAGATTAAAAGCATCATCACGCTGGTATGCAAGCCTGGTGAAGGTGACAGCGCCCCTTTGCTGAAGAGCGTGTCCAGCGACGAGTGTGTCTATGAGTTTGAATGGCACACCGCTGCAGCCTGTGTATTGTCCAAGACCAAGGGAGACCACTGCGTGGTGTCGGACCCCCAGGCTGTGTGGAATCTCGGGGAGTTCAACGCTAACCTGTCCTACTATGACGGCATGATCCAGCTCACTTACACGAACGGGACCCCGTACAATAACGAGCAGCACACTCAACGCTCGACACTTATCTCCTTCCTGTGTGATCGGGAGGCTGGAAAGGGCTACCCCCAGTATCAGATTGAAGATGGGACCACTTACAACTTCAAGTGGTACACCTCATACGCCTGCCCAGAAGTGCTGCTGGAGTGTATGGTGACTGACCCAAACACAATGAAACATTTGTCCAGGTCGGTAGGCAGTGAGGAGCCCAACTGGTATGCTATGGATGACTCTGGCAGTCTGAGGAAGTACTACATCAACGTTTGTCGCCCCCTCAACCCTGTGCCGGGGTGTGACCGCTATGCCTCGGTCTGCGAGATAAAGTACGAAGCGCAAGGGGACATGATGGTTGAAAAGGTGTCCATTAGCAACCTGGGCATTGCAAAGAAGGGCCCCGTGATCGAGAAGGAGAACAGTCTGCTCCTGGAGTACAGTGATGGATCGCTGTGCGACTCAGATGGCAGGAAGATGCCCTACACCACCAGAATCCACCTGGACTGCTCCCGGGGTGCCATGTCTTCTGGCCCTCGCTTCATCATCAGTGAGAACTGCACCACCACCTTCCTGTGGGAGACCGAGGCTGCCTGTGCCATCTCGAACTCCGAGAACAAAAATGAGACCTGTACTGTGAAAGACCCGAACACAGGATTCGAGTTCAACCTGAACCCTCTTGCTTCCCAAAATGGTTACACAGCTTCAGGGAATGGGAAGACATTCAAGGTGAATATATGTGGCTCGATACCGGAGTGTGGAGAAAGTCATGGCAAGCCTATGAGAGGCTGTGAGCTGGAGGATGGGCAGCCTGTGGCTCAGGTTGGGGTGGAGAGCTCCTTGCAGTTCTCCACTGACAGCTTGCTGACGCTCACTTACAAAGGGGACCTCGATAAGCCCACAGGAACTCGGGATACCTTTACCATCAGCTTTGCCTGCGACCAGGACACATACCCGGGGGAGCTGCGGCTCCTGCGCGAGGAGATGAGCTCGTCTGCCCACGTGACTCACGATGCGTTCTTCGAGTTCCGCACCGCTCTGGCCTGCGTACCCGCCCCTGTGGACTGCAAGGTCACCGATTTGTCTGGCAACGAGTACAACCTTGGGGACCTCAGTAGAGACGACCAGCCCTGGGAGGCGATTGACACCTCGGCGGACTCGAAGAAGAGGACCTTCTACCTCAATGTCTGTAAGCCCCTGCCTTGGGTACGGGGCTGCCCAGGAGGAGCCCTGGGTGCCTGTGCCAAACTCGCCACTGGAGGCCTGAACCTAGGCTACATACAGAGCAGCCCCCAGGCGTCCCAGGACGGCTCTCTCAGCATCGTCTACCACAACGGGGAGAAGTGTGGCAAAGGCCGTTACTCCACACGCATTATCTTCCAGTGTGACGACAGCCCAGGGTCCCCTGTGTTTGAACGTCAGGACGGCTGCGAGTACGTGTTTGTCTGGAGGACCTCTGAGGCGTGTCCCATTCGCAGAGCTCAAGGTTACAACTGCACAGTAAGGGACCCCCGCAGTGGATATGTGTTTAACCTGAGAAACCTCTCTGGAAGTGATTACGTGGTGAAAACTGAGAAGTACGACTATCACATAGCAGTGTGTAACTCCCTTCAAACTAAAATCTGTACTCGCAAAGACACAGGAAGTGATGTGGTGTCCTCCTGTCAAGTTGACCACTCTCAGGGACATTTTCAGAGGATCTcggGACTGTCCACACAGAACCTCACCTATGAAGACGGGCTCTTAATGATCAATTATACCCGGGGGGAGAAGTGCCATCAGATTTACCAGCGCTCCACCGCCATACTGTTCAGCTGTGACCACAGCAAAAACCCTGGGACCCCCGTCTTCCTCAGGGAGACCATGGACTGCACATACCTGTTTGAGTGGCACACCACCCTCGCCTGCCTTCCCTTCCAGACAACTGGCTGCGCATTCAAGGATGACGACGGAAATTCTTATGACCTTTCACCTCTGTCGCGGCACCGGGACAACTGGATTGTGGTTGGAGATGAGAATGGGGCAACGATGCGCTATTACATTAACGTCTGCAAGTCCCTTGTGCCACAGAGTGGCTCCTGGAAGTGTCCCTCCAGCGCAGCAGCTTGCCTGAAGAACGGAGAACAGTACAGCAGCCTGGGGGAGGCAGAATCTGGGCCGCAGTGGGAGAACAACGTGCTGGTCCTGAGGTACGTCAACGGAGAGTTCTGTCCGGataggaagaggaagaagatgaCCATCATACGCTTCAAATGTGACGAAGACAAAGTGGACTCGAAGCCAACCCTGATCACCGCAATTGAGGACTGCGTCTATACCTTCATGTGGTTCACAGCGGCGGCCTGTCCTCTCAAGAGCATCACACATGGAGACTGCAAAGTCACCAATCCAGTAACAGGGCATCTGTTTGACCTGAACGGACTAAACCAAAACGTCGGGTACATTACATACAGCAGCGGCAGGCAGCCGATTCACCTCAATATCTGTGGAGCCGTTACCAGTGGGGGTTGCACCGAGGGAGCCGGGGATCCCTGTCCCAGCAACTCCGCCCTCAGGCACAAGAGCATCTTCAGCTTTGTGTGCAGGTCCGACAGCAGCCTGCCCAACAGACCTGTGCTGGTGTCTTCGGATGAGGAATCGTGCACCCACTTCTTCTCCTGGCACACGCCGCTCGTCTGTGAGCAAGAGGTGAGCTGCTCGGTTTTGAACGGGAGCTCCAGCATAGACCTGACTCCGCTGATCCACAGAACTGGCTATTACTCTGCCACTGATGAAGACCTGGAAAAAGCCAAATCTCCAGACTTTTTCATTAACATCTGCCAGCCCCTGAACCCTATCCCTGGAGTGAACTGCCCTCCTGGAGCCGCTGTGTGCATGGACCCTGTCGACGGGCCTCCTATAGACATTGGGCGAATCACTGGACCGCCACAGATCAACGAGGCCATCAACGAAGTGTACATTTCCTTCAACAGCAGCACCACGTGTCCCTCTGACCCCTCCAAGAACTACACGTCTCTCATTGTGTTCAGCTGCCAGCGAGGCACAGACATGGGTACACCCCAGATGATCAGGAAGTCCAGCTGCAGCTATGTGTTTGAATGGGCCACGCCACTCGTGTGCCCTGACTCAGTCAGCTTTTCCAACTGCCGTCTCAAGGACGAGCAGCTGCAGTTCACCTTCGATCTGTCCCCTCTGACAGGGCAGAGTTACCAGgtACCGTCCGGCTCCAACACTTTCCTCATCAACGTGTGTGCAGAAGTGAAGGACTCTAAGTGCAAGGGCAGTGCTGTGTGCCTGGTCTCGGGCGATACTGTGTCTTCCTTTGGGATCCCTAAGATGATGTCCATGGACTACAACCGTCAGGACCAGACCATTCTAATGAAATACATCAGTGGAGACTCCTGTCCATCAGTGACTGAAAAAGAGGAAGTATGCGTCTTCCCTTTTCAGTTCCAAAAGAAACCCTATATGAAGTGCACCACAGATGGCAGGGTTGACAACCGAGATTGGTGCGCAACTACGGATGACTACGACAGAGATGGAAAATGGGGATTTTGCGCAAATGTCACAGAAAAGAAGAGCTCCACCTTCATCTTCAAGTGTGATCGGTCAGCCGGCCGAGGCTCCCCCCAGCTGCTCAGCGTAACCCAGGGCTGCTCGACCCTTTTCGAGTGGAAAACCAGCGTGGTGTGCCCTCCCAAGAAAATGGAGTGCAAGGTGGTGAACAATCACATGACCTATGACCTGCGCACCCtgtcctctctcacctctccCTGGAAATTCAGCCACAACGGCGACTCGTACTACATCAATGTTTGCCAAGGTATGTATGGAGGCCTGACGGACTGCCCAGAGAACGCCGCTGTGTGCCGGAGGACATCAAAGGGAAGCACGCAGGCTTTGGGACTAGTCTACACCCAGAAGATCAGTTTTAGGGGCAAGTAG

Function

GO: NA

KEGG:

id description
K06564 IGF2R, CD222; insulin-like growth factor 2 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3032 lncRNA upstream 152710 14851752 ~ 14866698 (+) True AMCG00003690
TU2960 lncRNA upstream 598098 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 940081 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1478254 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1504343 13514660 ~ 13515065 (+) True G2334
TU3118 lncRNA downstream 60258 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 61334 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 74225 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 255950 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA downstream 255950 15310321 ~ 15318228 (+) True AMCG00003702
AMCG00003691 mRNA upstream 14131 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003690 mRNA upstream 152650 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003688 mRNA upstream 402216 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003682 mRNA upstream 438498 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003681 mRNA upstream 461215 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003695 mRNA downstream 10645 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003693 mRNA downstream 50373 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003694 mRNA downstream 90251 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003703 mRNA downstream 200685 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003702 mRNA downstream 246709 15301080 ~ 15317830 (+) False AMCG00003702
TU2954 other upstream 599676 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1862781 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1976811 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3442079 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3527965 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 981292 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2627446 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3083384 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3092289 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4313822 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile