RNA id: AMCG00003699


Basic Information

Item Value
RNA id AMCG00003699
length 1824
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00003699
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15157494 ~ 15159317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATTAGCGGCTCCTGGTGCCACGCCCCTGGTGTTCCGGCTTCAGGAAGGTACCCCTGAGGTAGTCCGGGAGGTGCTGCTTGAGCGGGGATGGGTGGAGTACAAcaagcaggagcaggaggaaggAGACTGGAATCTATACTGGCGCACCTCGGCCTTCCGGCACGCAGAGTATGAAAACATCTTGCCCTGGCAAAGGCTGAACCACCATCCCAAAACATCTGGCCTGACACGGAAAGACAGCCTGGCAAGGAACTTGAAAAGGATGAGGGGGACTTTCGGCTCAGCCCTTTATGATTTCAGTCCCACTGCTTTCATCCTCCCCAACGATTACACCCGGTTCTTGGCTGAGTACACCAAGGACCAGCCCGAGAATGGAGGGACACCTGGGTATTGGATCTGCAAGCCGGTTGATCTCTCCCGGGGAAGgggtatatttgttttcaaggcCATTAAGGATCTGACCTATGACTCACCTGTCATCGTACAGCGGTACATCAGCAACCCTCTGCTGGTTTCAGGGTACAAGTTTGACCTTCGCATCTACGTCTGTGTGCGGAGCTTCCACCCTCTCACCGTGTACATGTACCAAGAGGGCCTGGTGCGATTTGCCACGGAAAAGTACAAGCTGACCTCCCTGGACAACCCATTTGCCCATTTAACCAACACGAGCATCAACAAGTTTGGACCCTCTTACACCACTGACAAAGAGCGGGTGGGCCCAGGATGCAAATGGACCATGAGTAAATTCCGCTGTTTTCTCCACAGCCAGGATATCGACGAGCTCCTTCTGTGGCAGAGAATCACCAGTATAGTCACACTCACCTTGCTCACTGTAGCCCCATCTGTTCCACCGAGCCCCAACTGCATGGAGCTCTTTGGGTTCGACGTCCTCATTGACAACAACTATAAACCGTGGCTGCTGGAGGTGAACTGTAGTCCGGCGCTCTCTCTGGACTGTCCGGCCGATGTCACTGTGAAGAAGGGCCTTCTTCACGACCTGTTTGATTTGCTGAACTACAAAAAGATCGATAGCCTGAGACAAAGCGGTTACTTGAGGCAACGCTATAGAGGCTTCTTAGGTCCGGAGTCTTTGGAATCCACCATTCCGCCGGTGCTCCTTCTGCCCAAGTCCATGTGTCAACCCATCTCACAGCACCAGAGCTTCAGTCAGGGAAACCTGCAGAGCTACAGTTCTGCCAGTGAGGATTGTTCACATGCAAAAGAACACTCGCGGTCCATTGCAGTCCAACTCAGCACTGCAGCTCGGAGGAGCCGGAGCGATTCGGCGCGTTGCTCCAAATACATCCCAAATTCCAAGGCATCTATCAGCTGCGAAAGCAACAGCAAATATCCTCCACTTTCCAAAATACCAAAGGGCATTCAGTTGGCAGCCAGCCAGGCAACACTAGAATCTGGATCTCAGTTGTCACTTAAACAAAAGAAACTTCCACTGAAGCAGTCATCCTTGGGTCTTGGTAAGCTACCTCCCATTCACATTCAGAGGTACAAACCTCCTTCGTTTCCGTGGGAGCAAACACCTCAGAACAGCCCGAGACCTCCCTCCCGCGTAGGGGACTTCATCCTCACCTTTCCGTTCAACGATGTTACCTTCAAGGCCTCACAGAGCAAAGTCAACGTGAGAGTCGCTGTCCATGAGGTTCACAGACTCATACATAGGCTGGCGTCCTCTGATAATCAGAAAGGGAAGGCGAGGAGAGAGGCTCGTGTGGAAGTCTGCGATGGGAAGGAATGCTTCGGATCATTGCTTTGGGGTCCGAGGTACCCTCCCTTGCTCAGCGAGTGCTGCTCCCCACCCTGA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16600 TTLL2; tubulin polyglutamylase TTLL2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3120 lncRNA downstream 41311 15115983 ~ 15116183 (-) True G2565
TU3021 lncRNA downstream 458257 14698959 ~ 14699237 (-) True G2494
TU2961 lncRNA downstream 736179 14420731 ~ 14421315 (-) True G2447
TU2959 lncRNA downstream 737762 14418578 ~ 14419732 (-) True G2445
TU2958 lncRNA downstream 741821 14415379 ~ 14415673 (-) True G2444
TU3188 lncRNA upstream 156079 15315396 ~ 15318210 (-) True G2615
TU3212 lncRNA upstream 218880 15378197 ~ 15378555 (-) True G2636
TU3213 lncRNA upstream 219441 15378758 ~ 15378981 (-) True G2637
TU3237 lncRNA upstream 350556 15509873 ~ 15510081 (-) True G2661
TU3261 lncRNA upstream 745170 15904487 ~ 15904821 (-) True G2682
AMCG00003700 mRNA downstream 13799 15142235 ~ 15143695 (-) True AMCG00003700
AMCG00003698 mRNA downstream 23710 15121769 ~ 15133784 (-) True AMCG00003698
AMCG00003692 mRNA downstream 140816 15006417 ~ 15016678 (-) True AMCG00003692
AMCG00003689 mRNA downstream 513038 14617463 ~ 14644456 (-) True AMCG00003689
AMCG00003687 mRNA downstream 625814 14528641 ~ 14531680 (-) True AMCG00003687
AMCG00003697 mRNA upstream 2508 15161825 ~ 15171332 (-) True AMCG00003697
AMCG00003704 mRNA upstream 222139 15381456 ~ 15388921 (-) True AMCG00003704
AMCG00003707 mRNA upstream 260375 15419692 ~ 15456251 (-) True AMCG00003707
AMCG00003708 mRNA upstream 319177 15478494 ~ 15487201 (-) True AMCG00003708
AMCG00003709 mRNA upstream 356355 15515672 ~ 15519593 (-) True AMCG00003709
TU3027 other downstream 346163 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 1144473 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 2046366 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 2122005 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 3079342 12076038 ~ 12078152 (-) False AMCG00003625
TU3242 other upstream 356356 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 2783260 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 2987343 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 4265646 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 4284699 19444016 ~ 19444743 (-) True G3523

Expression Profile