RNA id: AMCG00003702



Basic Information


Item Value
RNA id AMCG00003702
length 4954
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00003702
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15301080 ~ 15318228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACACGCACTGGCTCTGTGGTGACACTGGAGGTGGCTAAGCAAGGAGCAATTTATCATGGACTGGCCACACTGCTGAACCAACCTTCTCCCATGATGCAACGGGCTTCTGACCGTGGCCGTGGCTCGGGTAAACCCAGACCAAAGAGCGAGGGCTTCGAGCTATACAACAATTCTGCGCAGAACGGGTCGCCAGAGAGCCCCCCGGACCCGTGGGGAGAGTATCCAGAACCAAAGAAAATGACTGGCGAGGAAAGGCTGCTGAAGAGAGCGGATCACCGCTCCAGTCCAAACGTGGCCAGTGAGTACAGCCCAGACCAGCCCCAGAGTCCCGGGGGGAAGCCTGTTTATCCTGGGGGACCAGCACCGAAAATCACATCTGCCTCTACTGGAAACCTCTGCCCCGAGGAGCAGACCCCGCCTCCACGCCCCGAAGCCTACCCTATCCCTACCCAGACCTACCCCAGAGAGTACTTCACCTTCCCGGCCTCCAAATCCCAGGACAGGATGGCCCCTGGCCCCGGGCAGCAGTGGCAGACCTACGAGGATGGAACCCTAGTCCACCCTGATGAGCACCCCCCAGGAAATATGAGCATGCAGCGGGCCACGCGCTCTCAGGAGGAGCTGTCCGACGAGCGGGGGGTTTACATCCCAGAGGACCTGGCTCAGCTGCACCACCACCAGCAGCTGCAGCGGGACACGGAGTACCACCAGGAGCGGGGCAGCGGGGACCACTGGAACCACCAAGTCTCCTCCTCGGTAGAGTCAAGCACCTCCAGCCAGGAGCACCTTAACtactcctcctcgtcctcctccaaGAACCCGCCCAACCACAAGAGTGGTCCAGGCCGCTGGAAGACCCCCCTCGGCCCGAACTCCGCCCCCGTGGCCGTGTCCCAGCCGATGCGCACGGACCTGctgcccccgccccctcccccaccccctgtgCACTACCCGGCCGAGTTCGACACCCAGACCgacctccctctcccccccccgccctcctcCGTCCCCCTGCAGGCCGCCGCCGACCGCAAGAAGAGGGAGGAGCAGCAGCGCTGGTACGAGAAGGAGAAGGCGcggctggaggaggagagggaccGGAAACGCAGGGAGCAGGAGAGGAAGCTGGGCCAGATGCGCAACCCTCCTGGACCCGGCCCGCTCCCAAACCAGCAGCACGGCACCCTGCCCCCACCCCTGCAGCACCAGCCCCTGCCTCCCCCCGGCCCCATGTCCATGCCCATGCCCATGCAGCCTCCCCAGCCCTACCTTCCTCCCCAGCACCAGCAGCCTCCCAGGCCAGAGAAACCGGCCAGCCTCCCCAGAGCGCCACCGCCCCCGCAGGACACAATCATCCGGGAGCTGCTCCCCCAGCAGCAGCCGCGCACCATCGAGCGGCGTGACCTGCAGTTCTTCACCATGAACAAGGACGAGCTGGCCTCCAGCGACAGCCTCTCGCCTGACCCCTGGAAGCGCGACGCCCGCGAGAAGCtggagaagcagcagcagctgcacaTTGTGGACCTGCTGGACAAGGAGATCCAGGAGCTGCAGTCGAAGCCGGAGCGCACGGCCGAGGAGAGCGACCGGCTGCGCAAGCTCATGCTGGAGTGGCAGTTCCAGAAGCGGCTGCAGGAGTCCAAGCAAAgtgaggaggacgaggaggatgaggaggatgACGACGAGGACGTGGACACCATGATGATCATGCAGAGGCTGGAGGCCGAGAAGAGAGCGCGGCAGACCGCTGTTCCAGCAATCTCTGTTCTAGACTTGGACGAGGAGCGACGGAGGAAACAGCAGCTGGAGGAGATCCGCAAGAGGGAGGCAGAGGACCGGGCCAAGCAGGAGGAGGAGCGGCGctggagggaggaggagagagcccGGCGAGAGGCAGAGGAAAAGAGGAGACAGGAAGAGGAGTACTACAATCGCCTGGAGGCTGAGCGGCGCCGGCAGCACGAGGAGGCCGAGCGCAAGCTGTTGACGCCTGACGAGCCCGGTCTGTACAGGCCTCCCCTCCCCAGGGACTACGagctcccccctcccccgccccccgccTCCACTAACGTCCCTCCACCCCCGCCTCAGAGAAACACCTCTTACCTCAAAACCCAGGTCATCTCCCCTGACACGCTGTACACTGCCAAGTTTGTCTCGTACAatgacgaggaggaggaggagaacgTGGGCCTAGCAGGTCAGGTTAAGTTCTCCGCCACCCGGAAGTCCTATGGCGACCTCCCCCCTGCGCCCCGGCAGCCGCAGCCGCCGTCTGCCCGCGCGCCCCGCCCAGTCTCTGATGGGATCTTTCTGTCCAGCTCATTCCAGCTGCCCGCAGCCAATGCCAACAGTACTGTCCCCAAGACAGgcccgccccctccccctcccgcCAAACCGAGCTTCATCCCTCCAGGCAACTCCAAAGGATATAATTCGTACACTGGAAACTCGGCCGGAGTTGTAGGAGCGCATGAAGTTTATAAAGACCTGCGAGAGAAAAGGAGTAAAGGCAGCCAAGAGCAGGACGACCCCAACGGCGCCCCCCCGGAGAGTCTGACTTTCAAGGAGCGCCAGCGGCTCTTTTCCCAGGGGCAGGACGTCTCCAACAAAGTCAAAGCATCTCGGAAACTCATGGAGCTCGAGAACGAACTCAACACGAAATAGACTAGAGCCTTAGCAGAGCGGCATGCCACGACCTcccgccccccccactccattCCTCCGCCCCCCTCACACCATTCCTCCGCCCCCCGGGGGAAGAGATGgcgtgttttttttctgtcatgagtgattcattttttttattttttttttggaaataaatggacTGTTAAAGATGATTAAGGTATATTGTTGCAATAGGACGAGAGACAATGTTTCGCTTACTTTCTGTGTGATCTATCAAAGATATATTAAAGcactgtaaaaaatgttttaattatatatataaataagaaagagAAAACCAAATGAAGGgggatatatttttgtttccttaaatGGTTCTTGGGTAAATtgtcaagatttttttttatatgtattttttcttttaaagcttaCATTAATGTGGAatcttttataatgtttttttttagctgttGCTGCATAACacatttccagattttttttcctctcctggCAAAATAAATTCCTGGGCTTTTTACAGAGCAATATTTCAGTGCTGTTTTCCCAGTGATTTCTGTTATGAAAGAGTTCAGCTGAAGAAGAAAAGATTCTCATTGATCCCAGGTGTAGGTCCAGTCTTTAGATGAACATGTTCGGTCCTGTGTTAATGAGTACACTGAAAGCAGTCCTGCCGCTCCATCTGGAGAGACGCGCTCACTCCCAGAGATCTCTAATTCAGAAGCAGGCGCTGAAGTGTCCGTGCTTCCACTGACACGGAGGCGCAGCCGTTCGCCGTTTTCAACTCGGTTTGAGGATCAAAAGCAGACCGGTTCTGTCCCATTCCAGGCACGGGATTTGACAGGTGGTTCGGACAAACCTGACGAGtcaacagtgttttaattgttgggagggttttgctttgatttgtttattttttggttttgttaatttagtttttagcGTTTTGCTGCTGTAACAGGCGCCTCGAAGTACACACACCCAGTACGTGTTCGAACTTGTCTGCCACACAACTATGAATCTGCAGTTATGGGTATTGAGACCACTTCCTTGAGACGGGGACCAGGACTCCGGGGAAATGCCatgattttaatttggttttatcCCTGTATTCTTCAGAGCCTTTGACACCAGCTGCACGTTTGCAAAGAGACGGTCGCTCTCTGCTTGACAGTGGCCTGATTTGTGCCCACAGAAAAATGTTTAACACTTGCGTTCCAGTGCACAGTTTTGGGTTCGTCTTGACATTGTAATCCTAGTcatttggtattgttttttttcttaatcgGTTATAAAGAAGTTCATTTTCTCAACATCGTTCCCTGGACATTGGGTGTTTGTCTGTAAAAAGTTTAAGAATAAGGTAGCTGTAAAATTGTGAACAAGGTGTCAGGTGAGAGTGTCAGTATCCTCCTTTTACTCTTCGCAAATGTTAATTGAcgcatacattttacagatgtaATTGGAATTTTAGATTAAGGTtaatcaaaactgttttttttttttttttttttatatatatattttacctcCGCAAATTGGTCACTTCAGATGTTTCAGAGCTGCACAGCAGGGTGCGTAACTGGATGTGCTGATTTTCTTGTGAAGGTGAAAGTTGGGTCTTTTCACTCTACCTGTTTCGTCATACGGAGATGTTTAACTGACGGGTGTCTCAGCTCTCCTGTTTGTAAGTTTTCTCTTAATTTGAATCTGTGACACTTTTCTAGTACAATGTTTGAGTAGTTCTTGTATGTTATTGTTCCTGCAAATTTTACATTGTTTGAACAGGTCACGGTTTTAATACATTCAGAGGAAGGACTTCAGAATCTTGGGCTGCAGTTAAATCcttgatttctttttaatgtgtatatatatattaaaagcatttaatagggaataagcattttgttttttgttttatttgtttttttgctttttaatctgCAAAATAAGTGACCAACCAAACTTTTATTTATCTTGAACTGGAAACCTGTGAACTAAACGTCAGTATGTTGTGGacctctgttgtgtgtgtgtgtgtgtgtgtgtgttgtgtggagaGCAAAGACATTCACTGCCTtaggaaaattattaaaaataaagataattaatacaaattgtatgATATCATTGCAGATCCCTGAGATTGGAGAagtgtgtgtctatatacatAGACACGCATGCATCAATACATGCaggttttagttttctgttctGCTTCTTTGGTTTTTGTACCGAAATGAAATAATTTTTTACAGTAAAAGGgtgtgaggtttttttttttttttttttttttttttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3126 lncRNA upstream 170880 15128596 ~ 15130200 (+) True G2571
TU3119 lncRNA upstream 184108 15115705 ~ 15116972 (+) True G2564
TU3118 lncRNA upstream 186243 15114629 ~ 15114837 (+) True G2563
TU3058 lncRNA upstream 270712 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 434382 14851752 ~ 14866698 (+) True AMCG00003690
TU3193 lncRNA downstream 55365 15373195 ~ 15377637 (+) True G2619
TU3217 lncRNA downstream 99146 15416976 ~ 15419869 (+) True G2641
TU3260 lncRNA downstream 586653 15904483 ~ 15904820 (+) True G2681
TU3280 lncRNA downstream 714878 16032708 ~ 16032935 (+) True G2698
TU3303 lncRNA downstream 763352 16081182 ~ 16084866 (+) True G2719
AMCG00003703 mRNA upstream 11504 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003694 mRNA upstream 144687 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003693 mRNA upstream 179514 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003695 mRNA upstream 204556 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003696 mRNA upstream 246709 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003705 mRNA downstream 16171 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003701 mRNA downstream 35648 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003706 mRNA downstream 76983 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003711 mRNA downstream 408612 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003712 mRNA downstream 707041 16024871 ~ 16038135 (+) True AMCG00003712
TU2954 other upstream 881348 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2144453 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2258483 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3723751 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3809637 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 717833 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2363987 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2819925 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2828830 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4050363 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile