RNA id: TU3165


Basic Information

Item Value
RNA id TU3165
length 7000
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00003702
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15301080 ~ 15318228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGGTGCACGGTCCGAGCTGCGCGGgaagcctgttttgtttttgttcccctcCCGCTGTAGGCCGCACTGACATTGAGATGCTAACCGCCTCTTCCCATTCTCCCCTTCCCActccaaccccctcccccatccccaGAGGAGACAGGAAGAGGAGTACTACAATCGCCTGGAGGCTGAGCGGCGCCGGCAGCACGAGGAGGCCGAGCGCAAGCTGTTGACGCCTGACGAGCCCGGTCTGTACAGGCCTCCCCTCCCCAGGGACTACGagctcccccctcccccgccccccgccTCCACTAACGTCCCTCCACCCCCGCCTCAGAGAAACACCTCTTACCTCAAAACCCAGGTCATCTCCCCTGACACGCTGTACACTGCCAAGTTTGTCTCGTACAatgacgaggaggaggaggagaacgTGGGCCTAGCAGGTCAGGTTAAGTTCTCCGCCACCCGGAAGTCCTATGGCGACCTCCCCCCTGCGCCCCGGCAGCCGCAGCCGCCGTCTGCCCGCGCGCCCCGCCCAGTCTCTGATGGGATCTTTCTGTCCAGCTCATTCCAGCTGCCCGCAGCCAATGCCAACAGTACTGTCCCCAAGACAGgcccgccccctccccctcccgcCAAACCGAGCTTCATCCCTCCAGGCAACTCCAAAGGTAGAGGCAGAGAGCAGCGAGACGTATCGCCCTcgtttttgtttcttccatttttccatttaatttttggaagtatgatttttgtgtgtgttttgctttttattgtattcaattttctcccacccccctcctctcgctctctctgtccgtAATCTAGTAGACTTCTAGCACCGCCAATCAGCTTGTGATTTCGGTTTGATTTTTCTGAGTCTCTTTAGTTTGTGACGTgctcgtttttttttctttttcctgttttttttttcagttttttactAGAAACCAAATCCCGAGTTTTTGATTCTCTGTCCACAAAATTCTCCTCTGTCCTTACCAATGACCCTTCTTTcaatcattcttttttttatttttttgtaaaagcaaTCGATAACGTGATTCAGTCTCCATTCCAAATCAAAGTACTGTTGGTTTTGACTCtcattcatgtttgtttggttttgcttCGGGGATCGCTCCCATCTAAGCAGGTCATGTCGGGTtaagggggaaaagaaaagtaaattcTGGCTTTGTGCCTCACTTTGCTCCTGGGCTCCAGAGGGTTAAAATTCCTGGGCCTCCAGCTCACTTGGCAATGGGGAAAAGATCTGATGATGGAAGCATTTTCTTTGTAAGTGGCTGTTTAAAGGTCATCAGTAGCAAAAGTACTGGACACACAGGACAGGGTTAAGCGAGATGAGCAGATTACAGTTGAACTTGAAGTGGTCCTTCTTGATCTGTCAGTGCCTAAACGTTTCCAACTAAAATAAGAACttcaataatttaaacacaAGTTTCCGTTCCTTGTGAGTGCCAAGTGCATCTTTTGGCTTAAATGAATCTTGGATTCCACAGCCCCATATTTTTTGGACTTCTGAACCCTTTGTTTAGTTTGCACAAGAGTGTCTGGGGTCTACATTGACTGATAGTGCCGCAAAacttaatgaaaacattagaaCGGATCTGATTTCCAATTATCagataatgtaaatatgtaaatactgcTATTTTAAAATTTGTTCTGTAGAATGCAGTTGTCTTTTTTAGGATGTGTGTAAAGGGTCCATTTTCATTCACACTCCTCAAGACAGGGATTGCAAAGCGTACACACGGACAAGCGCGAAACAATTCTGTATCAGACGAACAGCTGAGGTTTGGTCAAgtatttataaaagaaaaagcttaGTAAGTTATAAAGAAATGTCAACATTTATGGCAGTGCAaggaaaaaagaacacaaaagaattattaaaatatcaagAGTATTCATctattctgaaaatgttttaaatagtttagtGATATAGATGTATAGTCTGTATTAAGTGGTTTTGTAGGGCTTTTAATCACAATGCAGGTATTTGACAAGGCCAGAGTAGGTATCCTGAAACACCTTTAACAGCCAAGTACAAAAATGCTCATAATGCAACACAGACTGGTAGCTCTTGAATGTTTCATACTGTCTGTGTCATTGAGCTTGTTTTTGTCAGTTGGAGGAGCTACAGTCTGTGCTGCATTACCTGTCCCAACCGATTTAATCAATCACTAACATGCTTTCCCGCATAGACAGATGCACTCGCCCAGCTCAAGCAGCCGACTAGCCTGCTAGCCTGCTATCCATTGCTGTTTACTGCCAGCGCTTTGCCTCACTCTCCTCCTTTCGAAACGTCATCTGTCCtcaccccccacctctctccgCAGTTGTGGGTGaagtccccccacccccccaacaagTTCTTTCTCAGTGCCACGATGCAGAACAGACCAGTCTGAATTCGGGGTAAatcagatctgcagaattgtGGCATAATAtggagaaaatgtataattttacatGGAAAGATTTCAAATACACTTTATATAATataccatttatttatatatattttttggggaGGTGGGGTATTCCCAGAAAATTCCCCACGTtgccatattttaaaattgctttcatCAGAAAGTTGGTTTGGTTCATAGTCACAATGCCACACACTGTACCCACGCGTGTGGCTAACACAAAATAACAGAGAAAAGAACGAGTTCTTCCATCGTGGTTTAGGGGCTTCACCAAGGCTTGCGATTTCTCTTGTAATCTGTGTCttctgcattgtgtgtgtgtggctgtgtgtgcatgtggctTGTTCTATGATGTCACTGTGTGCTGCAGCCTCTTCGCCAGCTCTTGGACTACAGAGATCTTTGGATCATCTCTACTGCTTCCTGAAATACTGACACTGAGACCATTCCACTGGCACAGCCACAGCGAAAGGGGAAAATGTATAGTGTAAACAGTGAAGGGCTAAAGCCCTACCAGCAAACCAGCTAAATGAGTCGGTTTCTCATTTCAGGATTGATATAAACAGCTCCTGGAcctttaagtatttttaaatgagaaactaAATTAGTTTGGCAAAGGGAATTCAGCTGTGAAGTCTGgccaaaaacatttttccagtgGTGTATTTTTTGCTACGGTTTCCCAGTTTGTGGTTCAGGGGGAGGGGAGTGGTCAGGAGAATGTCACCAGGAGGTGGGCCAAGCCGCAGCTTAGTGCTGGCCTGTCTGACCCACGTCAGGACTTTGGCCCATTTTCCTCAAGTCAGCGCTGACCTGTTGCTGGTGGAGTGGTTTGTTTGCTCTCTCAGATTAACGTGTTTGTTTCGGACTTTCTATGGTTGGCCttcagagcttttttttttttttgccatcaAGGATATTCTGCTAGTCTTACTTTCTCAAATGTTAAGGGTTGTTTTATCTGCAACACCTAAGTTAGTCCAACTGTATCTGAAATGTCCAGATCATGAAGGCCAAGTATTGAAAGCCCACCAGACACCGTGACATCTGTGAGCCTGATGCACACTAATATGATAACTGGTATCGTTGATGGATTCGGAGGTGGAAGTCAGCGCTAGGTgccatttaaatttatttttggtgCTTCTGAAATGCCTAAATGCCTCAGTTCTGGAACAAGGGAGCTGGGAATTGAACTTCACATTGTTTAGTGCACAAAATCATTCATAATTTCACCTTGTAGGAACGGAGTATACAGAGTTCAAAGCAGTGATCTTCTGAGCGCTGGTGTTAGATCCAGCTGGCTATTGACTTCCAtctttgatatatataattaattttgtatggGTTTCTTCAAATGTGCCTGAATGTTTCTGGGTAGTATTGAAGTGAAAGAAAACTATCTCTAATTGAATCCCAACAAAACTGCTCTTTGTTGTACACAGTGGAATGGACAGGTTCAAGTTGTCAAGAGTTCAATGCAGGTCAAAAATGCCAACATCACTACCCAGCAACTTTAGGAAACATTTGAAGGTCGACCTTTGATGCCACTCTGTCCTCTGCACCGCTAGTGGTTGGCACTTCCTcatttttgtaacttttttgcctttttcattcaataaaacAGGATATAATTCGTACACTGGAAACTCGGCCGGAGTTGTAGGAGCGCATGAAGTTTATAAAGACCTGCGAGAGAAAAGGAGTAAAGGCAGCCAAGAGCAGGACGACCCCAACGGCGCCCCCCCGGAGAGTCTGACTTTCAAGGAGCGCCAGCGGCTCTTTTCCCAGGGGCAGGACGTCTCCAACAAAGTCAAAGCATCTCGGAAACTCATGGAGCTCGAGAACGAACTCAACACGAAATAGACTAGAGCCTTAGCAGAGCGGCATGCCACGACCTcccgccccccccactccattCCTCCGCCCCCCTCACACCATTCCTCCGCCCCCCGGGGGAAGAGATGgcgtgttttttttctgtcatgagtgattcattttttttattttttttttggaaataaatggacTGTTAAAGATGATTAAGGTATATTGTTGCAATAGGACGAGAGACAATGTTTCGCTTACTTTCTGTGTGATCTATCAAAGATATATTAAAGcactgtaaaaaatgttttaattatatatataaataagaaagagAAAACCAAATGAAGGgggatatatttttgtttccttaaatGGTTCTTGGGTAAATtgtcaagatttttttttatatgtattttttcttttaaagcttaCATTAATGTGGAatcttttataatgtttttttttagctgttGCTGCATAACacatttccagattttttttcctctcctggCAAAATAAATTCCTGGGCTTTTTACAGAGCAATATTTCAGTGCTGTTTTCCCAGTGATTTCTGTTATGAAAGAGTTCAGCTGAAGAAGAAAAGATTCTCATTGATCCCAGGTGTAGGTCCAGTCTTTAGATGAACATGTTCGGTCCTGTGTTAATGAGTACACTGAAAGCAGTCCTGCCGCTCCATCTGGAGAGACGCGCTCACTCCCAGAGATCTCTAATTCAGAAGCAGGCGCTGAAGTGTCCGTGCTTCCACTGACACGGAGGCGCAGCCGTTCGCCGTTTTCAACTCGGTTTGAGGATCAAAAGCAGACCGGTTCTGTCCCATTCCAGGCACGGGATTTGACAGGTGGTTCGGACAAACCTGACGAGtcaacagtgttttaattgttgggagggttttgctttgatttgtttattttttggttttgttaatttagtttttagcGTTTTGCTGCTGTAACAGGCGCCTCGAAGTACACACACCCAGTACGTGTTCGAACTTGTCTGCCACACAACTATGAATCTGCAGTTATGGGTATTGAGACCACTTCCTTGAGACGGGGACCAGGACTCCGGGGAAATGCCatgattttaatttggttttatcCCTGTATTCTTCAGAGCCTTTGACACCAGCTGCACGTTTGCAAAGAGACGGTCGCTCTCTGCTTGACAGTGGCCTGATTTGTGCCCACAGAAAAATGTTTAACACTTGCGTTCCAGTGCACAGTTTTGGGTTCGTCTTGACATTGTAATCCTAGTcatttggtattgttttttttcttaatcgGTTATAAAGAAGTTCATTTTCTCAACATCGTTCCCTGGACATTGGGTGTTTGTCTGTAAAAAGTTTAAGAATAAGGTAGCTGTAAAATTGTGAACAAGGTGTCAGGTGAGAGTGTCAGTATCCTCCTTTTACTCTTCGCAAATGTTAATTGAcgcatacattttacagatgtaATTGGAATTTTAGATTAAGGTtaatcaaaactgttttttttttttttttttttatatatatattttacctcCGCAAATTGGTCACTTCAGATGTTTCAGAGCTGCACAGCAGGGTGCGTAACTGGATGTGCTGATTTTCTTGTGAAGGTGAAAGTTGGGTCTTTTCACTCTACCTGTTTCGTCATACGGAGATGTTTAACTGACGGGTGTCTCAGCTCTCCTGTTTGTAAGTTTTCTCTTAATTTGAATCTGTGACACTTTTCTAGTACAATGTTTGAGTAGTTCTTGTATGTTATTGTTCCTGCAAATTTTACATTGTTTGAACAGGTCACGGTTTTAATACATTCAGAGGAAGGACTTCAGAATCTTGGGCTGCAGTTAAATCcttgatttctttttaatgtgtatatatatattaaaagcatttaatagggaataagcattttgttttttgttttatttgtttttttgctttttaatctgCAAAATAAGTGACCAACCAAACTTTTATTTATCTTGAACTGGAAACCTGTGAACTAAACGTCAGTATGTTGTGGacctctgttgtgtgtgtgtgtgtgtgtgtgtgttgtgtggagaGCAAAGACATTCACTGCCTtaggaaaattattaaaaataaagataattaatacaaattgtatgATATCATTGCAGATCCCTGAGATTGGAGAagtgtgtgtctatatacatAGACACGCATGCATCAATACATGCaggttttagttttctgttctGCTTCTTTGGTTTTTGTACCGAAATGAAATAATTTTTTACAGTAAAAGGgtgtgaggttttttttttttttttttttttttttttttttaatgtaaggtGTCTAAGTGATGTCTGAACAATGCGGTGATGACTttgggtaagaagagcctgtcGGAGCCGGCGGACTGTGCAGGCGAGAGGATCGGCCCAGCGTTGCCACGGCCTTTGCTCTGTTCCTGTCAAACTTGTATCCCTGTGCTGCAgaagtatttaatttttgttttctaatgaataaatgaataaaaatgtaaaataaaaaaataaaataagacttaGGAGAATAAGTTGAGTGTTTGTGCCTGGATTTCTAGGAATGTCAGGGTTCCTTGTATGAGCTCTCCAGTGCTGTTCTTTCGAAGGTGGGAGAAAATTGCTGGAAAGCATCAAAACTGCTGTAGTATATCATTTCTACTGTATTTCACTTGCAAcctatttttaataaactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3126 lncRNA upstream 180121 15128596 ~ 15130200 (+) True G2571
TU3119 lncRNA upstream 193349 15115705 ~ 15116972 (+) True G2564
TU3118 lncRNA upstream 195484 15114629 ~ 15114837 (+) True G2563
TU3058 lncRNA upstream 279953 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 443623 14851752 ~ 14866698 (+) True AMCG00003690
TU3193 lncRNA downstream 54967 15373195 ~ 15377637 (+) True G2619
TU3217 lncRNA downstream 98748 15416976 ~ 15419869 (+) True G2641
TU3260 lncRNA downstream 586255 15904483 ~ 15904820 (+) True G2681
TU3280 lncRNA downstream 714480 16032708 ~ 16032935 (+) True G2698
TU3303 lncRNA downstream 762954 16081182 ~ 16084866 (+) True G2719
AMCG00003703 mRNA upstream 20745 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003694 mRNA upstream 153928 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003693 mRNA upstream 188755 15104744 ~ 15121566 (+) True AMCG00003693
AMCG00003695 mRNA upstream 213797 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003696 mRNA upstream 255950 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003705 mRNA downstream 15773 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003701 mRNA downstream 35250 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003706 mRNA downstream 76585 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003711 mRNA downstream 408214 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003712 mRNA downstream 706643 16024871 ~ 16038135 (+) True AMCG00003712
TU2954 other upstream 890589 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2153694 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2267724 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3732992 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3818878 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 717435 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2363589 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2819527 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2828432 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4049965 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU351527 True 8671 lncRNA 0.42 2 NC_047613.1 16796442 ~ 16807291 (+)
mexican tetra (Astyanax mexicanus) TU351527 True 2170 lncRNA 0.41 3 NW_019171597.1 135031 ~ 137329 (+)