RNA id: AMCG00003707


Basic Information

Item Value
RNA id AMCG00003707
length 1758
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00003707
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15419692 ~ 15456251 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcaaactgtTGTCTTCCAGAGCCGACATACATCACTATTGGGCCTCCGATTTGTGAGGTCTTGGAGAACTGCACCCTCACGGACCAGGACTGCACTTTTGGCTTCCGATTGAACCAGAATGGCTGCCGCACCTGTCAATGTAAAACAAGAGAGGAGCTGTGCATTGGGCTGATCGCAGGCTGCTCACTCGAATGCCCCTTTGGGTTTCAGACGGACATTCACGGCTGTGGGATCTGCCAGTGTCGCCCGCGGCCCAAGAAGTGCAAGTCGGTGGTTTGTGACAAGGACTGCCCTTTCGGCTTCATGAAGAACAAGCATGGCTGCGACATCTGCCGTTGCAAGAAGTGTCCTGAACTGCCATGTGACAAAGACTGTCCAATGGGCTTTGAGCACGAGAGCCACGGCTGCCTTATCTGCAAGTGCCGAGATGTTGGCCCTTCAATGCCACCTCCGGTGAAAATCGGCTCCTGCCTGTCGATGGACGGCCGCCGGCACGAGAGCGGGGAGAACTGGCACGATGGCTGCCGCGAGTGCTACTGCCACAACAGCCGGGAGATGTGTGCCCTGATCACCTGCCCTGTGCCCGCCTGTGGAAACCCCACTATCCGCCCGGGGCAGTGCTGTCCGTCCTGTCCAGATGACCCTAACTCGAAGAAGCCTGAGCTCAGTGACTCGACTATCTGCCACGCCCCCAGCGGAGAGTACTTTGTGGAGGGCGAGACGTGGAACATTGACTCCTGCACCCAGTGCACCTGCCACAGCGGGCGCGTGCTGTGCGAGACGGAGGTGTGCCCTCCCCTGCTGTGCCAGAACCCCATCAGGACCCAGGACTCCTGCTGCCCACAGTGTCCAGACGAGCCCTTGCAGCCATTGTCGCCCAGCAATGAGAGCATGCCAAGCTACTGCAAGAACGAGGAAGGGGATATCTTCCTGGCGGCCGAGTCCTGGAAGCCCAACGTGTGCACCAGCTGCATTTGTCTGGACGGGGTGATCAGCTGCTACTCTGAGTCCTGCCCTCTCGTTGCCTGTGCCCGGCCTGTCCTCAGGAAAGGGCAGTGCTGCCCCTACTGCCTGGAGGACACGATTCCGAAGAAGGCCGTGTGCCACTTCAACGGGAAGACGTACGCGGACGAGGAGAGATGGGACATCGACAGCTGCACTCACTGCTACTGCCTGCAGGGACAGACTCTGTGCTCCACGGTCAGCTGTCCAGCTCTGCCCTGCGTGGAGCCCATCAACGTGGAGGGGAGCTGCTGCCACATGTGCTCAGaGATGTATGTGCCCGAACCTACCAACATACCCATTGAGAAAACGGACAAGAGAGGCGAGAACGATCTCCACGTCCCAATCTGGCCGACGGGCAGCGAGAACGAGATCTTGCCGCAGTTCAGAGGGGAAGCAGGTAACCTCCAGATGCAATATGGGAAGCTCCCCACGCCCAGCGAAGACAGCACCTTGCATTCGGTAGCTTGGGTCACCCTGCCCATCATGGTGTCTCTGATCGCCATCACCGCGCTCCTCCTCATCAACCAGAAGAAGCAGTGGATACCCGTGCCCTGCTACCGAGCGCCCACGAAGCCCACCTGTCTGAACAACCAGCTGGTGTATGTGGACTGTAAGAAGGGCACCATGGTTCAGGTGGACAGTCCTCAGAGGATGCTTCGCATGGCGGACCCAGACTCCAGATACAGCGGCTACTACAgcatgcagaaacaaaacaacctgcAGGCGGACAATTTCTACCAAACTGTGTGA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0001558 regulation of cell growth biological_process
GO:0001568 blood vessel development biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K24518 CRIM1; cysteine-rich motor neuron 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3213 lncRNA downstream 40711 15378758 ~ 15378981 (-) True G2637
TU3212 lncRNA downstream 41137 15378197 ~ 15378555 (-) True G2636
TU3188 lncRNA downstream 101482 15315396 ~ 15318210 (-) True G2615
TU3120 lncRNA downstream 303509 15115983 ~ 15116183 (-) True G2565
TU3021 lncRNA downstream 720455 14698959 ~ 14699237 (-) True G2494
TU3237 lncRNA upstream 53622 15509873 ~ 15510081 (-) True G2661
TU3261 lncRNA upstream 448236 15904487 ~ 15904821 (-) True G2682
TU3278 lncRNA upstream 573173 16029424 ~ 16030186 (-) True G2697
TU3281 lncRNA upstream 576436 16032687 ~ 16032922 (-) True G2699
TU3305 lncRNA upstream 623148 16079399 ~ 16084866 (-) True G2720
AMCG00003704 mRNA downstream 30771 15381456 ~ 15388921 (-) True AMCG00003704
AMCG00003697 mRNA downstream 248360 15161825 ~ 15171332 (-) True AMCG00003697
AMCG00003699 mRNA downstream 260375 15157494 ~ 15159317 (-) True AMCG00003699
AMCG00003700 mRNA downstream 275997 15142235 ~ 15143695 (-) True AMCG00003700
AMCG00003698 mRNA downstream 285908 15121769 ~ 15133784 (-) True AMCG00003698
AMCG00003708 mRNA upstream 22243 15478494 ~ 15487201 (-) True AMCG00003708
AMCG00003709 mRNA upstream 59421 15515672 ~ 15519593 (-) True AMCG00003709
AMCG00003710 mRNA upstream 134371 15590622 ~ 15591023 (-) True AMCG00003710
AMCG00003714 mRNA upstream 586477 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003717 mRNA upstream 638895 16095146 ~ 16116740 (-) True AMCG00003717
TU3027 other downstream 608361 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 1406671 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 2308564 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 2384203 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 3341540 12076038 ~ 12078152 (-) False AMCG00003625
TU3242 other upstream 59422 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 2486326 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 2690409 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3968712 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3987765 19444016 ~ 19444743 (-) True G3523

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024187 True 5458 mRNA 0.51 17 NC_007128.7 38927889 ~ 39185336 (-)
grasscarp (Ctenopharyngodon idella) CI01000062_00250054_00388224.mRNA True 3081 mRNA 0.56 17 CI01000062 250054 ~ 388224 (+)