RNA id: AMCG00003712


Basic Information

Item Value
RNA id AMCG00003712
length 2586
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00003712
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16024871 ~ 16039640 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGGATATACCATGCTGCGAAACGGCGGGGGTGCAGGGAATGGGGGTCAGCCATGGGTGCTGCGCTGGTCGAACCGGATCCGCCTGACCTGGCTCAGCTTCACGCTGTTCGTCATCCTGGTCTTCTTCCCGCTGATCGCCCACTATTACCTCACCACCATCGACGAGGCAGAGGAGCCCGGCAAACGCATCTTCGGGCCGCGGCCAGGCAGCGAGCTGTGTGAGGTTAAGCACGTGCAGGACCTCTGCCGCATCCGTGAGTCTGTCAGCGAGGAGCTACTGCAGCTGGAGGCAAAGCGACAGGAGCTGAACGGGGAGATCGCCCGGCTCAACCTGAAGATCGAGGCCTGCAAGAAGAGCATCGACAACGCCAAGCAAGACCTGCTGCAACTCAAGAATGTCATCAGCCAGACGGAGCACTCCTACAAGGAGCTCATGGCACAGAACCAGCCCAAGCTCTCTCTCCCCGTGCGCCTGCTGCCGGACAAGGACGACGTGGGCCTGCCTCTACCCAAGTCGGCACGCTCCTGCCGGCTGCACTCCTGCTTCGATTACTCCCGCTGCCCGCTGAGCTCGGGCTTCCCTGTCTATGTGTACGACGCCAGCAGCTACCCCTGGGGCGAGGGCCTGGACCCTTTAGTCAAGCAAGCTTTCGCAGCCTCGGCCAAAAGCAGCGTCTACGTCACGGACAACCCTAGCATTGCCTGTCTGTACGTGGTCCTGGTCGGGGAGCTGCAGGAGCCCCTCTCCTTGTCTCCGTCCGATCTAGAGAGCCAGCTGCACACTTTGCCGTATTGGAGGACTGACGGGCACAACCACCTGCTGGTGCACCTCTCCCGCAAGTCCATGACTCAGAACTTCCTGTTCAACGTGAGCACAGGCAGAGCGGCCATGGCCCAGTCCACCTTCCTGGAGAGTCAGTACCGAGATGGCTTCGACCTGGTGGTATCACCCTTGGTTCACGCTCTCTCTGAGCCCAACTTCTTGGAGGTGCCCTCCCAGGTGCCGGTGAAGAGGAAGTTCCTCTTCAGCTTCCAGGGGGAGAAGGTGGAGTCGCTTCGGAACAGCCTGCAAGAGGGGCCCCCCCGCTCCTTCGAGGAGGAGATGGAAGGGGACCCCCCTGCGGATTACGACGACCGCATCATCGGCACCCTCAAGGCGGTGCAGGACAGCCACCTGGACCAGGTGCTGGTGGAGTTCACCTGCAAGAACCGCCCACGCACAGCCAGCCTGCCGACCGAGTGGGCGCTGtgtggggagagggaggagaggctGGAGGTGCTCAAGGCCTCCACATTCGCCCTGGTGATCGCACCGGGTGACGGCCGGGTGGTGGCTTCGGCCGGCTGTGGCATGCGGCTGTTCGAGGCCCTGGAGGTCGGCGCCATCCCCGTGATCCTGGGCGACCAGTCCAGGCTGCCCTACCACCAGCTGATCCGCTGGAGCGAGGCGGCACTCATCGTGCCCAAGCCGCGCATCACTGAGGTGCACTTCCTCCTGCGCAGCATCTCGGACAATGACCTGCTGGCCATGCGCCGCCAAGGCCGCTTCCTCTGGGAGACGTACTTCGCCACGGCCGAGAACGTCTTCAGCACCCTGCTGGCCAGCTTCCGCACTCGCATCCAGATCCCCGCCGCCCCCATCCCAGAGGAGCCGGCCCAGGAGATCCCGCACAAGGCAGGCAAGGCGGCCGGCACCGACCCCAACATGGCGGACAACGGCGACCTGGACCTGGGGCCGGTGGAGACGGAGCCGCCCTACGCCTCTCCACGCTACCTGCGCAACTTCACCTTCACAGCGGCCGACACATACCGGGCCTGGAACCGGCCTCCGGGGCCCTTCCATCTGTTCCCCCACACCCCGCTGGACCCCCTGCTGCCCTCCGAGGCCAAGTTCCTGGGCTCGGGGACCGGTTTCCGGCCTATTGGGGGCGGAGCGGGTGGCTCCGGTAAAGAGTTCCAAGCAGCACTGGGCGGGAATGTCCCCCGAGAGCAGTTCACTGTGGTCATGCTCACCTACGAGAGGGAGGAGGTGCTGATGAACTCTCTGGAGAGACTCAATGGGCTTCCCTACCTCAACAAGATCTGTCCGCAGGCAGTAGTGTGGCGCGAGGCTAGGGACCGCATTGTGGGGTTTCCCGGGAGGTACCACGCCTGGGATGTGAACCACCAGTCCTGGCTCTACAACTCCAACTACTCCTGTGAGCTTTCCATGGTCCTGACTGGAGCTGCCTTCTTTCACAAGTACTACGCCTACCTGTACTCCTACGTGATGCCTCAGGCTATCAGAGACATGGTGGATGAGTACATCAACTGTGAAGACATCGCCATGAACTTCCTAGTCTCCCACATCACCAGGAAACCCCCCATCAAGGTTACGTCTCGCTGGACCTTCCGCTGCCCCGGCTGCCCCCAGGCTCTGTCTCACGACGACTCCCACTTCCACGAGAGACACAAATGCATCAATTTCTTTGTCAAGGTGTATGGCTACATGCCCCTGCTGTACACCCAGTTCCGAGTGGACTCGGTGCTGTTCAAGACCCGGCTGCCCCACGACAAGACCAAGTGTTTCAAGTTCATATAG

Function

GO: NA

KEGG:

id description
K02370 EXTL3; alpha-1,4-N-acetylglucosaminyltransferase EXTL3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3260 lncRNA upstream 120051 15904483 ~ 15904820 (+) True G2681
TU3217 lncRNA upstream 605002 15416976 ~ 15419869 (+) True G2641
TU3193 lncRNA upstream 647234 15373195 ~ 15377637 (+) True G2619
TU3159 lncRNA upstream 706643 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA upstream 706643 15310321 ~ 15318228 (+) True AMCG00003702
TU3303 lncRNA downstream 43047 16081182 ~ 16084866 (+) True G2719
TU3309 lncRNA downstream 47005 16085140 ~ 16085992 (+) True G2721
TU3352 lncRNA downstream 191800 16229935 ~ 16231498 (+) True G2755
TU3409 lncRNA downstream 390899 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 555129 16593264 ~ 16597369 (+) True G2833
AMCG00003711 mRNA upstream 273010 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003706 mRNA upstream 626465 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003701 mRNA upstream 654005 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003705 mRNA upstream 690553 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003702 mRNA upstream 707041 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003713 mRNA downstream 33417 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003715 mRNA downstream 98711 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003718 mRNA downstream 169712 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003720 mRNA downstream 220319 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003719 mRNA downstream 249527 16287662 ~ 16288702 (+) True AMCG00003719
TU2954 other upstream 1605139 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2868244 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2982274 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4447542 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 4533428 11490185 ~ 11491443 (+) False AMCG00003606
TU3719 other downstream 1643682 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 2099620 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 2108525 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3330058 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5511066 21549201 ~ 21549533 (+) True G3751

Expression Profile