Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00003713 |
| length | 1242 |
| RNA type | mRNA |
| GC content | 0.61 |
| exon number | 9 |
| gene id | AMCG00003713 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 16071552 ~ 16079315 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K24885 | HMBOX1; homeobox-containing protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU3280 | lncRNA | upstream | 38617 | 16032708 ~ 16032935 (+) | True | G2698 |
| TU3260 | lncRNA | upstream | 166732 | 15904483 ~ 15904820 (+) | True | G2681 |
| TU3217 | lncRNA | upstream | 651683 | 15416976 ~ 15419869 (+) | True | G2641 |
| TU3193 | lncRNA | upstream | 693915 | 15373195 ~ 15377637 (+) | True | G2619 |
| TU3159 | lncRNA | upstream | 753324 | 15310321 ~ 15318228 (+) | False | AMCG00003702 |
| TU3303 | lncRNA | downstream | 1867 | 16081182 ~ 16084866 (+) | True | G2719 |
| TU3309 | lncRNA | downstream | 5825 | 16085140 ~ 16085992 (+) | True | G2721 |
| TU3352 | lncRNA | downstream | 150620 | 16229935 ~ 16231498 (+) | True | G2755 |
| TU3409 | lncRNA | downstream | 349719 | 16429034 ~ 16430555 (+) | True | G2797 |
| TU3454 | lncRNA | downstream | 513949 | 16593264 ~ 16597369 (+) | True | G2833 |
| AMCG00003712 | mRNA | upstream | 33417 | 16024871 ~ 16038135 (+) | True | AMCG00003712 |
| AMCG00003711 | mRNA | upstream | 319691 | 15726442 ~ 15751861 (+) | True | AMCG00003711 |
| AMCG00003706 | mRNA | upstream | 673146 | 15394813 ~ 15398406 (+) | True | AMCG00003706 |
| AMCG00003701 | mRNA | upstream | 700686 | 15353478 ~ 15370866 (+) | True | AMCG00003701 |
| AMCG00003705 | mRNA | upstream | 737234 | 15334001 ~ 15334318 (+) | True | AMCG00003705 |
| AMCG00003715 | mRNA | downstream | 57531 | 16136846 ~ 16161082 (+) | True | AMCG00003715 |
| AMCG00003718 | mRNA | downstream | 128532 | 16207847 ~ 16210277 (+) | True | AMCG00003718 |
| AMCG00003720 | mRNA | downstream | 179139 | 16258454 ~ 16265698 (+) | True | AMCG00003720 |
| AMCG00003719 | mRNA | downstream | 208347 | 16287662 ~ 16288702 (+) | True | AMCG00003719 |
| AMCG00003727 | mRNA | downstream | 336135 | 16415450 ~ 16427708 (+) | True | AMCG00003727 |
| TU3283 | other | upstream | 31912 | 16035663 ~ 16039640 (+) | False | AMCG00003712 |
| TU2954 | other | upstream | 1651820 | 14418516 ~ 14419732 (+) | True | G2440 |
| TU2754 | other | upstream | 2914925 | 13155060 ~ 13156627 (+) | False | AMCG00003655 |
| TU2685 | other | upstream | 3028955 | 13037437 ~ 13042597 (+) | True | AMCG00003648 |
| TU2385 | other | upstream | 4494223 | 11573731 ~ 11577329 (+) | True | G1989 |
| TU3719 | other | downstream | 1602502 | 17681817 ~ 17683988 (+) | True | G3047 |
| TU3792 | other | downstream | 2058440 | 18137755 ~ 18142633 (+) | True | AMCG00003779 |
| TU3794 | other | downstream | 2067345 | 18146660 ~ 18152314 (+) | True | G3108 |
| TU4227 | other | downstream | 3288878 | 19368193 ~ 19369266 (+) | False | AMCG00003828 |
| TU4541 | other | downstream | 5469886 | 21549201 ~ 21549533 (+) | True | G3751 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00035040 | True | 1236 | mRNA | 0.55 | 11 | NC_007131.7 | 49787584 ~ 49804597 (+) |
