RNA id: AMCG00003715


Basic Information

Item Value
RNA id AMCG00003715
length 2606
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00003715
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16136846 ~ 16161082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGAAACATGTGTTTGGGACATGTTGGATGCCGGATGTTTACAAGATAGTTAGTTGAATGTGCACGttgatatatacatttcagttgtagtattttattgttgttgtttattcaaCACCAAGTGATTTCAAACATCAATTCGCACACGTTGTACCGAGGACAACGTAAATCGCGACATGGGCAAGCCAAAGAAAAAGAgtGACCTCAGCCATGCCGAGCTCATGATGATGACGATCGCGGACGTGATCAAGCAGTTGGTGGAGGCCCACGAGGAGGGGAAGGACATCAATCTCAACAAAGTGAAGACAAGAACGTCTGCCAAGTACGGGCTCTCGGCTCAGCCTCGGCTGGTGGACATCATCGCAGCCGTACCTCCCCACTACCGGCGGGCCCTGGTGCCCAAACTGAAGGCCAAACCCATTCGCACGGCCAGTGGGATCGCAGTGGTCGCTGTCATGTGCAAGCCCCATCGCTGCCCTCACATCAACTTCACCGGCAACATCTGTGTCTACTGCCCTGGAGGTCCTGACTCAGACTTCGAATATTCGACCCAGTCCTACACCGGATATGAGCCCACCTCCATGAGAGCCATCCGGGCCCGCTACGACCCCTACCTGCAGACCCGCCACCGCGTAGAGCAGCTGAAGCAGCTGGGCCACAGTGTGGACAAAGTGGAGTTCATCGTGATGGGCGGCACGTTCATGGCGCTGGCGGAGGAGTACAGAGACTACTTCATCAGGAACCTCCATGATGCGCTCTCGGGACACACCTCCAACAGCGTGACGGAGGCTGTCAGGTACTCGGAGCGCAGCAACACCAAGTGTGTGGGCATCACCATCGAGACGCGGCCGGACTACTGCCTGAAGCGCCACCTCAGTGACATGCTGGCCTATGGCTGCACACGTCTGGAGATCGGTGTGCAGAGCGTCTACGAGGATGTGGCCCGAGACACCAACAGAGGCCACACGGTAAGGGCGGTCTGCGAATCCTTCCACCTGGCCAAGGATGCCGGCTTCAAGGTGGTGGCGCACATGATGCCCGATCTGCCTAACGTTGGCCTGGAGAGGGACGTGGAACAGTTCATTGAGTTCTTTGAGAATCCCGCGTTCCGGCCGGACGGGATGAAGCTGTACCCCACTTTGGTGATCCGCGGCACGGGGCTGTACGAGCTCTGGAAGACCGGCCGCTACAAGAGCTACTCGCCCAGCACCCTGGTGGACCTGGTGGCTCGTATCTTGGCGCTGGTGCCGCCCTGGACCCGAATCTACAGGGTGCAGAGGGACATCCCCATGCCTCTGGTGAGCTCTGGGGTCGAGCACGGCAACCTGAGGGAGCTGGCACTCGCCCGCATGAAGGACATGGGCACCGAGTGTCGAGATGTCAGAACGAGGGAGGTGGGAATACAGGAAATCCATCACAAAGTCAGACCCTACCAGGTGGAGCTGGTGCGCAGGGACTACGTGGCCAACGGGGGCTGGGAGACGTTCTTGTCCTACGAGGACCCCCAGCAGGACATTCTGATCGGCCTGCTGCGTCTGCGCAAGTGCTCCCCGGAGTCCTTCAGGCCGGAGCTGAAGGGGGGCGTGTCCATTGTCAGGGAGCTGCATGTCTACGGCAGTGTGGTCCCCGTCAGCAACCGCGACCCCAGCAAGTTCCAGCATCAGGTGGAGTGCCCTTACCCCGCTCTTATATTGCTATCGGGTTTCGGGATGCTGCTCATGGAAGAGGCGGAGAGAATCGCCCGAGAGGAGCATGGATCGGGAAAGATCGCTGTCATCTCAGGCGTGGGAACCAGGAACTACTACAGGAAGATCGGCTATGAGCTGGAAGGGCCGTATATGGTGAAGAAGCTGGACTGAGCTGTGGAGAACAGGTCTTGAGAGGGTCTCAGGTTAGAGAGGTTAGAGAGAGGGACCTTGTCCTCCCCAGCCTGCGGTCTCTGCTTTCacatatgggggggggggaactggGAGGTAGAGACGTGGAACTGCTTCCTCCACCGAGACTCGTTTCACTGAAACGCTTGGCGTCCGTTGGCAAGAAATAATGTTCCCCCTTGGAACTTCTTTAGATGTTTATCGACAAAGACTGACAGCCTTTTGTGGGGCATCTTCAGTAACTTGGTTCTCATATGATGCATCATTGGGGAAGGtggtttgcttttattttgacaaaacaCGCTTCATTTTAAGGGGGGCAGTATCAATTGTCAGCAATCAGGTAATATGTTAAAATACCTGTTTTGTTGCTAATTGttaacaattatttgtttattcatattagattttttagtagcatttttaaataagaaaacataaattGCTTACTAGCTGCTAAGAATTCATTAAAAGTATTCAgtctacaaatacaaatacatgcacCTTAAAATTAAGCGGGATTGTGAAAATAgggttattttgaaataaatatagccAGTTCTCCTCAGTGTGAAGTGCAGATCTGAGctgttgggttttattttcagctcctgtatgttctgtacatttattttgattattaaattgacttaaaaaaaaaattagactaattttagtaatttaaacattgtgtCAGCTccttaaataaagtatttatcaaacagaca

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0007409 axonogenesis biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0008607 phosphorylase kinase regulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
K07739 ELP3, KAT9; elongator complex protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3309 lncRNA upstream 50854 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 51980 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 103911 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 232026 15904483 ~ 15904820 (+) True G2681
TU3217 lncRNA upstream 716977 15416976 ~ 15419869 (+) True G2641
TU3352 lncRNA downstream 68853 16229935 ~ 16231498 (+) True G2755
TU3409 lncRNA downstream 267952 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 432182 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 437976 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 707217 16868299 ~ 16934020 (+) True G2861
AMCG00003713 mRNA upstream 57531 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003712 mRNA upstream 98711 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003711 mRNA upstream 384985 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003706 mRNA upstream 738440 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003701 mRNA upstream 765980 15353478 ~ 15370866 (+) True AMCG00003701
AMCG00003718 mRNA downstream 46765 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003720 mRNA downstream 97372 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003719 mRNA downstream 126580 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003727 mRNA downstream 254368 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003730 mRNA downstream 357024 16518106 ~ 16522586 (+) True AMCG00003730
TU3283 other upstream 97206 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1717114 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 2980219 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3094249 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4559517 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1520735 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1976673 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1985578 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3207111 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5388119 21549201 ~ 21549533 (+) True G3751

Expression Profile