RNA id: AMCG00003716


Basic Information

Item Value
RNA id AMCG00003716
length 2600
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00003716
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16175771 ~ 16181167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTTTTACCTTATTTTTTAGATGACAGCATTAGTAGTACGAAGTTGTATATTGCTATGTGATCAGATCGACAGCATATTATAGCTATAATAAGATTATTAGTACCAGCTATACTACGCACTTTGACAGCAGGATTTGCACAGGACAGTTATACCAGGAAGTGAAAGTAACCACCGAAGGGTCAGCAGGTGTCATGGAGCAGGTGTACACCCTGGTGAGGGAGGTGGGCCGGGGGAGCTATGGTGTGGTGTTCGAGGGGAAGTCAGCCGACAGGGGGGAGAGGGTGGCCATCAAGAGGCTCCTCTGCAGCAGCCCGGAGAGCGTGGAGCTGTACCTGCAGGAGGTGCGGGCCCTGCAGGCGTCCGGGGACAGCCACCCCAACGTGATCTCCCTCCACCGCTGCCTCCTGCAGACCGCGCCCAAAGCCTTCCAGCCCCTTCGCTGCTCCCCGGGCGGCACGTCTCTGCCTCTCGAGCTGGTGGAGAGCACCCTCAAGGGAAAGATTTGTCCCCCCCAACAGTGCCAGCGCCGCCGCCCGAGCCGCCGCCCCCCTGCCTCGGGCTGCGCGGTCCTCTGGCTGGTAATGGAGTTCTGCGAGGGCGGGGACCTGAACCAGTACCTCCTCTCCCGCCCGCCCAACCCCAGCCTGCACCGCAGTGTGCTGAGGCAGCTGAGCTCCGCCCTGGCCTTCCTGCACGGCCGCCACATCGTCCACAGGGACCTCAAGCCCGACAATGTCCTGGTGGCCGCCTCCCCCACCGGCCCTCTGTTCAGGGTGGGAGACTTCGGGCTGAGCCGGATCAGCGGGGGCAGCTCAGACACCAGCTGTCAGAGCTTCTCCTCCACCTGCGGCTCAGAGTTCTACATGGCCCCCGAGGTGTGGGAGGGCGACTACGCGGCCAAAGCGGATATCTTCTCCCTGGGTGTCCTCTTCTGGGCTGTCCTGGAGAGGATCACGTTCCTGGAGGAGGACTCCGGCCGGGAGCTCCTGGGGGCCTATTTGGGTCAAGGCTCTTCCCTGGTGCCCATAGGAAAGGCTCTCCTTAAGAACCCCGGACGGAAGCTCCCAATCCCCCTGAGAGCGAGGAGGCCCATGCATCCGGAGCTGAGGACTTTGCTGCAGGATATGTTGGCCTTTGATCCCAAGCACCGGCCTGAGGCTTTAGAGCTGGAGCTACGGGTCCGACAAGCCACTGCGGAGGACTACTAGCACCGCACGGGCTGGGGATCTCCACCGGACTGCAGTGGGAAGCATCAGTACGCGGGTTCACCGTTTCCAGACTCTCCAGAGGACGGGTTATCCCATCTATATCAGGGGTGCTTATAATGCCTGCTGCTTTTCTTTCGCCCAAGTAGATTCCAGCACAGATGCTCCGCTGTGAGAGAACATCAACGTCAAATTGCAGCTCATATTTGTCAATTGCAGACCAGTTCCAAACACTGTCATCCTGACTACAGATGGGGGAAGTAATCTCCAGTCTCTCCGTCATGCTGACTGGCAAGCTGTAGGAGGGTTAATATCAATTCTGAGCGGCACTGTTATAATTTCAGCCACATCACATGTGGTGCTGGTCACTACTTTATCAGCCCCTGCAGATGCCACTGCCCAGTCAATGCTGCTTTTCCTTTATTATTGTACTGTGGGCACTGTTGAATAAGGGAGGCCCTTCttttaactgaaatgtgttcCCCATCTTAAAGGACTCAAATGGACTTAAggaatttaatgcattttgggCTTTGAATGAGGAAGACATTGAAGCTTCTTCATCCTCTGGAATCTGATGAAGTCCATTTGCTTTTTAGCATTCATATCTGTGCCAAGAGACAGCCTGATGTTTGATGGTCCCACATGAGATGATCATATCAGGGCTTCACTCTTAAGTGTCTTCTCCAACTCTCGTGAGTTATGAGTGACCAGCTGGGCcttcaatataaaaaatgaaactcaTCATTCCTTACATCAAAGAGTATAAATATTAGTAAAAGTAAATCAGGAGAAGATAATACCGAAGTGACCACTATCATACATGATTGttctgtctatgtgtgtgtgtgtgcatatatatatatatatatatatattacacacgtTGTTAcctatttatttcaaatcatgACAAGTacatatgtttttgtaattaaatacgTTTTCCAAAATAATCATCTTTTGTCATGGTCAAATTCCTGGCATTTTACTTGAAGGTGTTGCCCTGTATTTGAGaactcattaaaaataattaaatcgaCAAATAAAAGGAGTACATGTTAAGTGAAATTAGGCACAGTACTGGTTCAGATGGGACTCCCTTTCCCATGTACACACGCACCATTTGATAAAGGTACAGCGCTAAACCCACGAGTCACCTGGACCATTGCCGTCTATATCAAATGAACAGAGTATATTAACCTGCCTCAAACACCTTGCTTTGCTCTGAATGCTCCACCCCCTCTTCTGGATCTGGTTTTTCCTGCAGTGCTGCCCTCTGGTGGGCAGGTCACTTTGTGGGTGGGGGTACCTTGAAAGGAAGGTAAAAGGTCAAGACTATTGCAACAGTAAATACAGAACTTGAAATCTGCTGACTTAACACTGTCAATC

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3310 lncRNA downstream 89776 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 90905 16079399 ~ 16084866 (-) True G2720
TU3281 lncRNA downstream 142849 16032687 ~ 16032922 (-) True G2699
TU3278 lncRNA downstream 145585 16029424 ~ 16030186 (-) True G2697
TU3261 lncRNA downstream 270950 15904487 ~ 15904821 (-) True G2682
TU3373 lncRNA upstream 66768 16247935 ~ 16250483 (-) True G2765
TU3452 lncRNA upstream 404895 16586062 ~ 16586266 (-) True G2832
TU3456 lncRNA upstream 406902 16588069 ~ 16588293 (-) True G2834
TU3480 lncRNA upstream 426671 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 687165 16868332 ~ 16871475 (-) True AMCG00003742
AMCG00003717 mRNA downstream 59031 16095146 ~ 16116740 (-) True AMCG00003717
AMCG00003714 mRNA downstream 120118 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003710 mRNA downstream 584748 15590622 ~ 15591023 (-) True AMCG00003710
AMCG00003709 mRNA downstream 656178 15515672 ~ 15519593 (-) True AMCG00003709
AMCG00003708 mRNA downstream 688570 15478494 ~ 15487201 (-) True AMCG00003708
AMCG00003722 mRNA upstream 31498 16212665 ~ 16222773 (-) True AMCG00003722
AMCG00003721 mRNA upstream 48490 16229657 ~ 16245607 (-) True AMCG00003721
AMCG00003723 mRNA upstream 70520 16251687 ~ 16258335 (-) True AMCG00003723
AMCG00003724 mRNA upstream 85733 16266900 ~ 16268503 (-) True AMCG00003724
AMCG00003726 mRNA upstream 111190 16292357 ~ 16300392 (-) True AMCG00003726
TU3242 other downstream 584041 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1364440 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2162750 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3064643 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3140282 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1761410 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1965493 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3243796 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3262849 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 3262849 19444016 ~ 19506753 (-) False G3523

Expression Profile