RNA id: AMCG00003718



Basic Information


Item Value
RNA id AMCG00003718
length 743
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00003718
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16207847 ~ 16210277 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCTGCCTCTACCAGTGCCACCCAGAGAGCCATGAAGACCCCACTATGGACCCTGCTGTTGCTGGGTCTGCTCGTCCCCATCCGCAGTGACTGTCAGAGAGACTGTCTGTCCTGCAGCCAGCgtctctttcagcaggatacaTTCAACACCCTGATATGCATCTTGGAGTGTGAGGGCAAGGTCCCCACAGCGGCTACCTGGGAGATCTGCCACAAAGCCGCGGGGAAGTCCTCCTATCCTGTAGGGGGCGGTGCACTGAAGAGAGGGGTGGAAGTGGCCCAGCTGCCCTTGGACCTGGAGGACGGGGGCCTACTCTACACGGGGGCCCTGAAGCGCTTCACCGACGTCACCCAGGCTTTCGATGTCGACAAATTGGAAGGCGAGAAGCGGGTCTCCAAAATCCGAGAGGCCTACCGCACCGAGGGGGAGTCCGAGGAGGGCCCGCTGGAGCCAGAGAGCTTGCCGGGGGACGAGTACGCCGTGCCTGCCCCTGAGGGCTCCATCGACCTCAGCAAGCGCTTCGGCGGTTTCTTGAAAGGGAAGTACGGCTACAGGAAGCTGATGGAGCCGGGCAGGTCCTTGCAGAAGCGCTACGGCGGCTTCATAGGCGTCCGGAAATCTGCCCGAAAGTGGAACAACCAGAAGAGGTTCAGCGAGTTTCTGAAGCAGTACCTGGGCATGTCCACGCGCTCCAGCGAGTACAACAGCCTCTCGGCCGACATCACCGAGCAGAACGAAATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3309 lncRNA upstream 121855 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 122981 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 174912 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 303027 15904483 ~ 15904820 (+) True G2681
TU3217 lncRNA upstream 787978 15416976 ~ 15419869 (+) True G2641
TU3352 lncRNA downstream 19658 16229935 ~ 16231498 (+) True G2755
TU3409 lncRNA downstream 218757 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 382987 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 388781 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 658022 16868299 ~ 16934020 (+) True G2861
AMCG00003715 mRNA upstream 46765 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003713 mRNA upstream 128532 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003712 mRNA upstream 169712 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003711 mRNA upstream 455986 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003706 mRNA upstream 809441 15394813 ~ 15398406 (+) True AMCG00003706
AMCG00003720 mRNA downstream 48177 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003719 mRNA downstream 77385 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003727 mRNA downstream 205173 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003730 mRNA downstream 307829 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003729 mRNA downstream 336795 16547072 ~ 16569703 (+) True AMCG00003729
TU3283 other upstream 168207 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1788115 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3051220 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3165250 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4630518 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1471540 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1927478 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1936383 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3157916 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5338924 21549201 ~ 21549533 (+) True G3751

Expression Profile