RNA id: AMCG00003720


Basic Information

Item Value
RNA id AMCG00003720
length 3225
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00003720
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16258454 ~ 16265698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCCGTCCGCCGTGCTCGTCTCTGGCGGGAAAACGCTGCAGTTTCGCAGAGGAGAAGGTGGAAGCAGCTCCACATGTGCACACGGTTGGCCAGATTGAATTGATACAagttaaaacttaatttaagaTCTGATTACCAGAATGGCTACCGAAGTCGTAGATGACCGAGAGATGCGAGAGGCGCAGAGGGATTATTTGGATTTTCTGGACGATGACCAAGACCAGGGCATCTACCAGAGCAAAGTGCGAGACATGATCAGCGACAACAAGTGCCGACTGATTGTCAACATCAACGACCTGCGGAGGAGGAACGAGAGCCGAGCCGCGCGGCTGCTGAACAGTGCCTTTGAGGAGCTCCTGGCCTTCCAGCGTGCCTTGAAGGACCTGGTGGCCTCCGTGGATGCCACCTATGCCAAGCAACACGAGGAGTTCTTTGTGGGCCTGGAAGGCAGCTTCGGCAACAAGCACGTCACCCCCCGCACCCTCACCTCTCGCCTGCTGGGCAGAGCCGTCTGTGTGGAGGGCATCGTGACCAAGTGCTCGCTGGTTCGACCCAAGGTTGTCCGCAGCGTCCACTACTGTCCAGCCACACAGAAGACCATGGAGCGGAAATACAGCGACCTGACGTCTCTGGAGCCTTTCCCGTCCAGCTCCATCTACCCCACCAAGGACGAGGAGAACAATCCCTTGGAGACGGAGTTCGGCCTGTCCATCTACAAGGACCATCAGACCATCACCATCCAGGAGATGCCCGAGAAGGCGCCGGCCGGCCAGCTGCCTCGCTCGGTGGACATCGTTCTGGACAATGATCTGGTGGACAAGGTCAAGCCCGGGGACAGAGTCCAGGTGATCGGCACCTATCGCTGCCTGCCGAGCAAGAAAGGGGGCTACACCTCGGGGAACTTCAGGACTATCATGATCGCCTGCCATGTGAAACAGATGAGCAAAGAGGTGTCTCCATTCTTCTCTGCGGACGACGTGGCCAAAATTAAGAAGTTCAGCCAATCTCGCTCCAAGGATGTCTTCAGCCAGCTGGCCCGCTCCTTGGCTCCCAGCATCCACGGCCACGAGTACATCAAGAAGGCCATCCTGTGCCTGCTGCTGGGGGGGGTGGAGAAGGTGCTGGAGAACGGCTCTCGAATCCGCGGCGACATCAACGTGCTGCTCATAGGGGACCCCTCGGTGGCCAAGTCCCAGCTCCTGCGCTACGTCCTCCACACCGCACCCCGTGCCATCCCCACCACGGGCCGGGGTTCCTCTGGGGTGGGCCTGACTGCCGCCGTCACCACAGACCAAGAGACCGGCGAGCGGCGGCTGGAGGCGGGCGCCATGGTGTTGGGCGACAGGGGCGTGGTCTGCATCGACGAGTTCGACAAGATGTCCGACATGGATCGTACAGCCATCCATGAGGTGATGGAGCAGGGCCGCGTCACCATTGCCAAGGCCGGCATCCACGCCCGGCTCAACGCACGCTGCAGCGTCCTCGCCGCCGCCAACCCCGTCTACGGCCGGTATGACCAGTACAAAACCCCCATGGAGAACATCGGGCTGCAGGACTCTCTGCTCTCCCGATTCGACCTCCTCTTCATCATGCTGGACCAGATGGACCCTGAGCTGGACCGTGAGATCTCCGACCACGTGCTCCGTATGCACCGGTACCGGAACCCGGGAGAGCAGGATGGAGCAGCGCTGTCCTTGGGAGGTTCTGTGGACATCCTGGCCACCGATGACCCCAATGTGAcccaggaagaggaagaggagctgCAGGTGTATGAGAAGCACAACAACCTGCTTCACGGGACCAAGCGCCGCAGGGAGAAGATCGTGAGCATGGAGTTTATGAGGAAGTACATCCACGTGGCAAAGGTCATCACCCCCGTGCTGACCCAGGAAGCAGCCAATCACATAGCGGAAGAGTACTCCCGCCTGCGCAGCCAGGAGCAGATGAGCCCCGACGTGGCCCGGACCTCTCCAGTGACGGCCCGAACGTTGGAGACCCTGATCCGATTGTCCACAGCCCACGCCAAGGCCAGGATGAGCAAAGCCATTGACCTGGAGGATGCCGAGGTGGCTGTGGAGCTGGTGCAGTTTGCCTACTTCAAGAAGGTTctggagaaagagaagaaacgCAGCAGGCCGGAGGAAAGAGACACTGAGTCCGAGGTCGAGGAGGATGAAGAGGGACAGGCTTCTCCCAAGCAAAAGAAGAAGAGAAGCCGCAAAAGCGCCGAGAGCCACCCCTCCACACAGAGCAGCGAACCCTATGACCCCTACGATTTTACTGGTGAAGGGGATGTCCCTGAAGTTCAAGCCCACACTCCCAAGGCCAGAGAAGAGCCAATGGAGGTGGCGGAAGCTGCAGGACTCTCCTCTGACAGGCTGAAGGAGTTCAAGGCGGCACTGCTGGAAGTGTTCAAGGCGGCCCACGCTCAGTCCATCAGCATGCGGAGCCTGATGGACGCCATAAACAAGGGCAGCTCGGCACCCTTCACCCAGCAGGAAGTGAGCGCTGCCCTTGATCGCATGCAGGACGACAACCAGGTCATGCTCTCCAATGACATCATCTTCCTCATCTGACAGCGCGAGGGCAGCAGTGAGTGCGAGTAAAGCACCAAGCGAGAGGAAGCGCATTTGACGACCTGCATTTCAGAGTGGGCTTTCCTCAGTTGAGTCTTGTTGTGTCCATTGAGGCCTGGACTCGGGTTTGGGCTTCTTAAGGCAACCCCGCTCCTCTGTTCCTTACGGGGGGaaacccattttattttattttattttttcaagtcagaagccagcgtattttaattgttttatttttaatttgatctccAAACAGTGTTTAAGTTATAACTCATAGTCTTGCTGTTTCCCAATCTTTAAATCATAACAGGCAGAATAATAACATCACTCTGGCTCTTGCCATTCTGCACTAAAGCATTTACTGAGAATTCACCAGCCAAGCTTACAGACTCTGTATGTGCCTTTCACCTCACAGACTTGCATACAGTTCAAGTTGATCTAAGGACACAGTaccttttggttttgtttttgagatttttttgtaaatgtaaaaaaagtgaaagaaatgtaaatatttgtacctctgctttaaaatgttttcaagtgTCTTCAAAAAGGAGAGAAAGCTGTAATGCTTCTCtcagaaatctaaaataatttgcttcTGTTGCAGACAGACAAGTTTGGATTAAACCTGATTTTCTATAA

Function

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02541 MCM3; DNA replication licensing factor MCM3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3352 lncRNA upstream 26956 16229935 ~ 16231498 (+) True G2755
TU3309 lncRNA upstream 172462 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 173588 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 225519 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 353634 15904483 ~ 15904820 (+) True G2681
TU3409 lncRNA downstream 163336 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 327566 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 333360 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 602601 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 775415 17041113 ~ 17042564 (+) False AMCG00003744
AMCG00003718 mRNA upstream 48177 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003715 mRNA upstream 97372 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003713 mRNA upstream 179139 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003712 mRNA upstream 220319 16024871 ~ 16038135 (+) True AMCG00003712
AMCG00003711 mRNA upstream 506593 15726442 ~ 15751861 (+) True AMCG00003711
AMCG00003719 mRNA downstream 21964 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003727 mRNA downstream 149752 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003730 mRNA downstream 252408 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003729 mRNA downstream 281374 16547072 ~ 16569703 (+) True AMCG00003729
AMCG00003733 mRNA downstream 310690 16576388 ~ 16589499 (+) True AMCG00003733
TU3283 other upstream 218814 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1838722 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3101827 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3215857 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4681125 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1416119 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1872057 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1880962 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 3102495 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5283503 21549201 ~ 21549533 (+) True G3751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034731 True 3062 mRNA 0.49 17 NC_007131.7 34770197 ~ 34783743 (+)