RNA id: AMCG00003721


Basic Information

Item Value
RNA id AMCG00003721
length 2797
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00003721
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16229657 ~ 16245607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTTTCAAAGGTTGTGGCCAGCTGAGCATTTAGTGCAGTGTGTTCAGACAGAGCAGCAGGAAGCCACCTAACTGGCTAAGGCTGAGGTGGCGCTCGAGGCAGGTAAGCAGAGCCGGCGCGCTCTCTCCAACACAGGACGCCTAGCCAAACCTAGTGTGGAACCTGTGAAATTAATTGAGAAGCCGTACCCAGCGCACAGGCCAGGGAAACAGGTGCCAGGAGCCTGCCGCTTCTGTgtcCATGGCTCCAGTGGGGACAGGGCTGGAGGCCTGGACGGCAGCGAGGGCCTTCTCTCTGGAGCTGCCTCTCTTGTCCGCCCTGGTTCTGCTCCTGCTGCTCTTCTCTGCCCTGTTCCTCTGCACAAACTGTGGCAGACTAAACTGGAGGATGTTGGACCCAGAACAAACCCAGACCTGAATGGGATTTTAAAGGACGAGATTGCACTGCGTCCTGTCCAGGTGGAAGTCAGTTCCCAGCTGTCCAACGGCCAAGACCAACTCTATGTCCAACCCTGGAGGAGCCACTTAGGAACTGTCAATCAGCAAGTCAAGCCAGTCATAGACACAGGCAGCAGCTCGGCACCCATACTTACAAATTCCTCGAATACAAATGCAGAATTCACCAATCAGAAGAAAACCTTGGGCGTGCGGACAGAAGAGATGATTCGCAGTGGGCTTCCACCAATCCCAGCATCTCAAACCACTTCAGGAGGAAGTGTCGCGGTTCCCACAATTGAAATCACTACTCCGGTGACAAGCCCCTGTATGGACACAGCATTTTCCGGAACGGACAACTGGAGGACTCGTCCTTTCCTGGAGAAGCGCAGCAGCACCAACACCTACGAGACCATCTCTGAGCTCACAGATGCAGCAGAGGGCCACCAGCTCCCGCCATTACCCCAAGGGACTTCGCCGCAATTCTGCCTGCCATCTGCCCCCTATTTCGAGGAGGACTTTGAGCACGAGGACCCAGAATACCATACGGTGGAGGAGCTGAGGGAGTCTGAAGAGCTCCCGTCCCCTGCGGACCTGAGTCCAGACCCAGGGGAAGCAGCAGCCTTGGATCGACATGAGATTCAGACGCGGTCTGGCTTGGTGTTAGAGGAATTACCCATGGGCGGGGCACACTTGGTCAGCTTATATGCCAAGATCAGCAGAAAGAATAAGAGCTCGGTCAAGGTGAAGGACTCCCCTGAGGAGCCAGCCAACCCTCCCACAGAAGAAGCAGAGGCAGAGGAAGATCTCTCGCCACCGCTACCAGAGAAGAGGTTTGACAAGTCTCTGGGGCTGCAGCAGATGTTAAGTATATACAAATCACAGCCAGTCCAAGACAAATAAATGCAACAGACTCGTGGAAATGGTCTCAAGGAGGAGACATGGGGTCTGAAATAAAAGATGAgccaagaaagaaaagagatgCCAACCAAACAGGACTGGCTACTGAACAGTGGACTATGGGATATCAATTTCATGAAGTAGTTGGAAACAGAGGGATCTTGGACATAGACAGCAAGAGGGGAACtttaaacacacaacaaaatccAATTTAGGTGACTAGAGGCTCCATGTTGGGTTCGCATGTTAGACTCTGTGGAAAATTGaaggttttgtgttttacttttattgctTTGCATgatgatttaatgaaaatactTTACCCCCATCAAGGGgaaggaaaatgaaacaaacaaacaataaactgctgtaatgttttcaaatacaaacatgcCATTATGTATTTTCTAACCATTTGCCCTTGGGCTCTTAAGTACATTAACTCCATGAAAAGGGAAAAGTTCTTTAACCTTCAGAAGCAGCAAGTCTTACAAAAGATTAGCTCTGGCCCCTCTGTGTGTCCCCTGACAGGGTgtatgacctctgacctctgacctctgttTTGCTGCTCCTCTCACGGGTGATTTTGTATACAAACAGCACtttggggttagggttaggataAGGGATAGGGATAGAgcactatataatatatataatataatataataatatatataatattatattatattatatatataataataataataataataataataataataataataataataatgtatataataataatagtaatacaagtTGAGTTCCATCACAAATGCATGTTATTGTAACACCAAAATACCAATAAAGCAATAGAGCAGTTATTGATGggtacatttattataattatgatatattattataaactgcACAGTAGTTTTAGACATTGGAGTTTGACTGCCATACAGATTTGGCTGCCTGTATGAGAAAACTTCAGGATTACCAATCTTGTGGCAGTGAAATGCTGAACCACATGAGCCACAATTGGATTAGAGTGTCACTGTTATATCTGACATGCAGAGTTTCTCTGTCCTGACActgccacagagcactttacagagcTGTACAGAGCACTGCCGGTTTAACGTAGGGTAGGATGGGTAATTTGTCATCCCTTATGACTATGTGAGTTGtatcatggaaaaaaataaatagatgttgtatttgcattgtctttgtgtgtgtgatttgagTTTGTTTATAAGGACTAGCCATAACTGCATAGTCATTACACTGGCTCCAGGGTCAAATATCTTAAACAGCAGATTTTTGTGTTACATTACAAATGATACTACATAGGAACACATTGATGGATCactaaatactgaaattaaGACCCTTTCCTATGGGaatagtaaaagaaaaaagctctgtgttttatttcttgactGTTGCTGTACTGAAAAATCAATCTCTCTTAAATATTGTAGTATTTTTAAAGCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3310 lncRNA downstream 143662 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 144791 16079399 ~ 16084866 (-) True G2720
TU3281 lncRNA downstream 196735 16032687 ~ 16032922 (-) True G2699
TU3278 lncRNA downstream 199471 16029424 ~ 16030186 (-) True G2697
TU3261 lncRNA downstream 324836 15904487 ~ 15904821 (-) True G2682
TU3373 lncRNA upstream 2328 16247935 ~ 16250483 (-) True G2765
TU3452 lncRNA upstream 340455 16586062 ~ 16586266 (-) True G2832
TU3456 lncRNA upstream 342462 16588069 ~ 16588293 (-) True G2834
TU3480 lncRNA upstream 362231 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 622725 16868332 ~ 16871475 (-) True AMCG00003742
AMCG00003722 mRNA downstream 6884 16212665 ~ 16222773 (-) True AMCG00003722
AMCG00003716 mRNA downstream 48490 16175771 ~ 16181167 (-) True AMCG00003716
AMCG00003717 mRNA downstream 112917 16095146 ~ 16116740 (-) True AMCG00003717
AMCG00003714 mRNA downstream 174004 16042728 ~ 16055653 (-) True AMCG00003714
AMCG00003710 mRNA downstream 638634 15590622 ~ 15591023 (-) True AMCG00003710
AMCG00003723 mRNA upstream 6080 16251687 ~ 16258335 (-) True AMCG00003723
AMCG00003724 mRNA upstream 21293 16266900 ~ 16268503 (-) True AMCG00003724
AMCG00003726 mRNA upstream 46750 16292357 ~ 16300392 (-) True AMCG00003726
AMCG00003725 mRNA upstream 62626 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003728 mRNA upstream 183420 16429027 ~ 16442526 (-) True AMCG00003728
TU3242 other downstream 637927 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1418326 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2216636 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3118529 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3194168 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1696970 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1901053 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3179356 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3198409 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 3198409 19444016 ~ 19506753 (-) False G3523

Expression Profile