RNA id: AMCG00003726


Basic Information

Item Value
RNA id AMCG00003726
length 2441
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00003726
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16292357 ~ 16300392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagacagacagaggactGTGAGCATCACTCCAGACACACAGGTGGGGACTCAGTAAGAGGACGGCCCTTCAGTTTGGAGGTTTCTCACCTTGAACGTCAGAGACTCGTGCCACCATGACCCTCGCAGCTTACAAAGAGAAGATGAGGGAGCTCCCCCTGGTGTCTCTATTCTGCTCCTGCATTCTCTCGGAGCCCCATGACAAACCCACCTACAAAGCGGAAGACGCAGTCGACCTCAGCTGGTGTGTGATCAAAGACGTGGAGGTGATCGAGCTCAACAAGAGAGCCTCGGGACAGGCATTCGAGGTCATCCTCAAGCCGCCCTCATTCGACGGCGTCCCCGAATTCAACACTTCCATGCCCAGTCGTCGTGACCCCTCCCTGGAGGAGATCCAGAAGAAGCTGGAGGcagcagaggagaggagaaagtgCCAAGAAGCTGAGCTGCTGAAGCACTTGGCCGAGAAGAGAGAACATGAGCGGGAGGTGATCCAGAAGGCCATCGAGGAGAACAACAACTTCATCAAGATGGCCAAGGAGAAGCTGGATCAGAAGATGGAAGCCAACAAGGAGAACAGGGAAGCGCTTCTGGCTGCCATGTTGGAGCGCCTACAGGAAAAGgaCAAGCATGCTGAAGAGGTGAGGAAAAACAAGGAACTGAAAGAGGAGGCTTCCCGGTagaacaaggaaaacaaacaaaaaagcacggGACtcgttttttgtgtgtgctagttgaggaaaaggaaacaaacaaaacaaacaaacaaacaaacacaatctgaaGGGTAGATGGAGagaattttccttttttataaaAGATGAAGATTTGATGAGTGCAAGCTCTTTGTCAGTCggaatgaaacaaaagaaaaaacaaagaaaaaaaaaattatgaaacaaAAGAGAAGTCggtatttgtttgtgtggcaATGCAAGGTGCACCAGTATCAGATGGTGATGCCTATGGTCTTTTGTGAAACGGATAAAAACAAAGCCAGGGCGAGGGTGTGGGCGCGTTGGGCTTAGCTGTTCACTGACAGCAAGTGGTGTGCTCAACTTGAAATGTGCTTTGCTGAAACGTCCCATTTGCAGATGTGGGAGCTTCCTGTACAATCACGCCAGGAGCGCTTACTGTAACTCCGCTGCCCGATGCGTATAATCAgactgctgctgccgctgccaTTTTTATGGAAATCTCTCTGTCATATCTACTATCATTTTCTCAAGTAGGCTCTTAAGTTTATGACAAGAATCTCATAATATATGCAGAGCTGTGGTCaatcaattaatgtattggtttCGTGCGGTTAATCAAAGTCATTGACCTAATTGCTGTGTACTTGTGGCACTTTTTATACACCCACTTAGCTAGGCGGGCACCTGTCagtaagtaaaacaaatattgcctCTTTCAGTAGTTTAAAATGGATGAAAGAGTCTATAGTCACCCCTTCTTCAGAAAAGCGTTTTTAAACAGAGTGTTTTGTTGTTCGTGTGTACTTTGATGAAGAGGGTTCCCATATCAACATCACAGCAGGCTTTTTTCAGGACTGGCAACAGGACATTACTGGAGACCAAAAGCATTCTTATAAAGAGAATGACCACGAACAAAATACCAAAAAGAGAGAAGAAGGGCATTCACTATGGATCACTATTTATTGCCCAAAACATTAGCTGGAGTTTTAGTTTGGTCTTGATTGGTATTCGCTGACCACCAaattaacaaagcaaataaGTCAACTAGTGATAAAGGAAACCCCAAATATCGCAGATCTTTAGGCATCTCAAACTCAGTTCTCTGGAAAAAGTCTTCTAgcttttgttccagcccagctcccaTTTAATTAGTACTTCAGGGGATTAACTGGATGAACCCATATCTTCTCTCCAGGCTGCAAATTATGTTGCAGGTGAAATGCCTCTAATCAAAAGCATCTTCAAAGCCGTGAACTGCACAAGCGCCGAAAAGTAGTGTTGTAAATGTCTAACTGATTCAATTAGTACCTTCATTATGCCAGTGAGCGCTGcagttggaatgaaaaacagaagacacgGCAGCCCCCCAGGCCCTGCGCTGGAGACCCCCGGTATAGACCCCCCGGGCGCAAGAAAATAAGCACATTTTCCCTGAAAGGCACCTGGTCGTTCGtagaataaagaaaacaagagtACACACATACTGCAGCCCGAGGGGTATAGACTGGCACAACCGAGTGAGATGTATAAAGAGAGCAGACGCATAGGAAACAGGTTAATGCGCACAAAACAGTCCAGCTGAGCCCAGTACAGCAGGGGGTTAGGATTGCAAAGGGAACCACACAGAAGTCTTAGGGCTGCACTACTGCCTCTGTAGGTGCACTTTGTTATGGCATGTCAGTGTCCTTCCtgtttgtgaaatgtgattGTTGAATATCCCCTGTGTGGGGCGgggctgtgtgtgg

Function

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3373 lncRNA downstream 41874 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 206362 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 207491 16079399 ~ 16084866 (-) True G2720
TU3281 lncRNA downstream 259435 16032687 ~ 16032922 (-) True G2699
TU3278 lncRNA downstream 262171 16029424 ~ 16030186 (-) True G2697
TU3452 lncRNA upstream 285670 16586062 ~ 16586266 (-) True G2832
TU3456 lncRNA upstream 287677 16588069 ~ 16588293 (-) True G2834
TU3480 lncRNA upstream 307446 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 567940 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 567940 16868332 ~ 16870943 (-) False AMCG00003742
AMCG00003724 mRNA downstream 23854 16266900 ~ 16268503 (-) True AMCG00003724
AMCG00003723 mRNA downstream 34022 16251687 ~ 16258335 (-) True AMCG00003723
AMCG00003721 mRNA downstream 46750 16229657 ~ 16245607 (-) True AMCG00003721
AMCG00003722 mRNA downstream 69584 16212665 ~ 16222773 (-) True AMCG00003722
AMCG00003716 mRNA downstream 111190 16175771 ~ 16181167 (-) True AMCG00003716
AMCG00003725 mRNA upstream 7841 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003728 mRNA upstream 128635 16429027 ~ 16442526 (-) True AMCG00003728
AMCG00003731 mRNA upstream 234847 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003732 mRNA upstream 270138 16570530 ~ 16576587 (-) True AMCG00003732
AMCG00003736 mRNA upstream 293044 16593436 ~ 16597326 (-) True AMCG00003736
TU3242 other downstream 700627 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1481026 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2279336 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3181229 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3256868 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1642185 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1846268 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 3124571 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 3143624 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 3143624 19444016 ~ 19506753 (-) False G3523

Expression Profile