RNA id: AMCG00003727


Basic Information

Item Value
RNA id AMCG00003727
length 5681
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00003727
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16415450 ~ 16427708 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cGCAGGAACTGGTGCGCGTACGTGGTGACGCGGACGGTGAGCTGTGTTGTGGAGGATGGAGTGGAGACCTACGTGAAGCCGGACTACCAGCCCTGCTCCTGGGGCCAGATTCAGTGTGCTAGGGTTGTGACGTATCGGACCTACATGCGGCCTCGGTACAAAGTTGCTTATAAGATGGTGACGGAGATGGAGTGGAAATGTTGCCATGGTTTCTCCGGAGACGACTGCAGCGAGGGGCCGAGCGGAGgccagacacagacacagatctCGACTGTCAGGCCCAGGCCCAAGCCTCACCGCCCCGGGCAGACTGGCTCAAACTCTGGCACAGTGCAGATTGGAGGAGAAGGGAGAGGGGAGAGCGACAAGGTGAAGCAGCTGGAAGACAAAATCCAGAGTCTGACCAAAGACCTCCATGACCTGCAGTCCACTCTGCGAGGGCTGAATGACAAGTTCCAGGAAGAGATCCGGAAGCCAGGGATCAACGGCAAGGTGCCTGCAGATGCTGCCGAGCCAGAGATGAAAGAGACACTCAACAGCATCCAGACCAAGCTGGACCAGCTCGACAACCGCACGCAGGCGCACGACAAGAAGCTGGTCACCATCAACAACCACCTAACCAATGGCAAGGGCACGAACAGCAACGAACTGGAGAGCTCTGATGTCACAGTGCAGAGGAAGTTCACGGAACTGAGGGAGGAGATCCTGAAAGAGGTGGAGGGGAGAATCAAGCAGTCCTGCGCAGCCTGCCAGACGGGGGCAGAGGATctgaagaagcagcagcaggaggatcGCGAGAGGATCCGGGAGCTGGAGAAGCTCATCAGTTCCATGGACCAGCGTAACCGGGAGATGCTTGAGAGCATCCAGAAGGACTTCTCCAGCACACAGGGATGCTGCGACCAAGTGATAGAGCTCAGGAATAAGTTTGGCGACATGGAGAGGAAGATTGACTCGGTGTCCGGGGCCTATGACATTTTGAACGGCCGCTTAGACAACGAGCTGGTTGCGATCAAGGAGGATGGAGATATGCTGACCACGGAAGAGAAAATCAAACTCCTGATGGGAGACCTGGAGAGCAGGATGAACAGCACTTTGGAGAAGACAGAGAGTCACTGCGCCACtgtggacaatgacctgaaggaATATTTCCAGAGGGAACTTAGCGACATGAGACACACATTAATCGACCAGTTTGATGAGGATGGGAGCAAGATCTCCACCCTGCAGATTGACATTGGTGACCTGAGGGACTCAGTTCTGGAGAACAAGGATCGGCTTGGAAGACTGGAAAATCTCACCTCCCTTTTGAATGACAAGCTGGCTTCGGCAGTGAGCAGGTGTGAGGAGAAGTGTACCACCGGCCAAGGCTCAGTAACTGGAGATGAGGCAATGGACGCTGTCAAGACGCTACAGTGGACGGTCATTGAGAACAAGGGCCAAATCCGTATATTCGACGACAAGATTAGGGACCTCTCAATGTCAGGGGATTCAATGTTTGAAAAAGTAGTGGGGATCAGCCACGATATTCGCAAAATAAAGGCCCTGACAGGAGAGAACGGGGAACACTTCAACAGGATAGTCAATGACATTGAAAATCTGGGGAAGACGCTGGAGACCTCAACGGCCAACTGCGATGTGTGCAGTATGCTCGACGAAGATCTGAGCTCCTTGCGGAACAATACGGATGACACCTTTAACAGATGGAACGCTGAATTCAATGACCTTCGCAACCGGATAGAGTCAGACGAGACCACATGTGCCCAAGTGTGCTCCAACCTGCAGGAGGAAGTGGGGAAACTGAAAGAAGATGTACAGAAGTGCACCGTACAGTGTAAAGTTGACTTAATCAGCCCCACTCCTGGCCATGGTGGTCTTGATCCACAGAAACCGTTAGATGGCCACAGCGTCATTGGGGGCACGTCCAGCATCAAACTGGAGTCTCTTCAGGGGGAGCTTTCTGAGGTCATTCTCACCTTCAGCTCCATTAACGACACCCTCAAGGGCCTGGAGCACACAGTGCAGAAACATGACAGCGTGATCTACGACTTGGGCAACACCAAGGACAAGATCATCTCAGAGATTGACAAGATCCAGCAGGAGCTGAGTGAGCACATAGAGGACAGCAAGAACCGCTTCGATCACGTGGGCAAGGAGATCCACCGCTTTGGCAGCAACTTCATGGTGGAGATGGGCGACTGCAAGCAGTCCTCCGACGGCCTGGCAAAGAGGATTGACAAGATGGAGAACGTCTGCGGGAGGCTGGACTCCGTCTCTGACAGCCTGCGGAGGATCAAGGAGGGTCTGAACAAGCACGTGTCCAGCCTGTGGAACTGCGTCAATGGGCTGAACTCCACTGTCATTTCTCACCGGTCTATCCTCGACACCCTTCGGAACACAGAGCTGGATGGGATCCATCACAGGATCAAAATCCTCAACTCCTCCATGCTCTACATATTCAACGAGTTCCACAACTTCACAAGCCAGGACTTTATTGGTCTCCCTGGTCCACCTGGtccccagggagagagaggcctACAGGGGCCTTCAGGACCCCAAGGACCGCCAGGCAGAGATGGGACCCAGGGCAGACAGGGGCTGGAAGGACCACAAGGGCCCCCAGgcTACCCAGGTGAAAAAGGTCTCCCCGGTATGGATGCCAGTGTTCCTCAAGTGTCTTTCTCTGCTGGGTTGACCAATCCCCAGGTTAATCCCGGGACCATCATTTTCGATAAGATCCTTGTGAATGATGGAGATTCCTACAATCCTGCTACAGGAATCTTTACGGCGCCATACGATGGGCGCTATTTCTTCAGTTGCATCTTGACCGGCCACAAGAACGAGAAGATCGAAGCTGTGCTCTCCATGTCCAACTATGGCATTGCGAGAGTGGACTCCGCCGGCTACCAGCCAGAGGGCCTAGAGAACAAACCTGTGGCAGAGAATAAGCCCACCCCAGGCTCCCTGGCCGTCTTCAACATCATCCTTCCTCTGCAGAAGGATGACACTGTGTGCGTCGACCTGGTCATGGGCAAGCTGGCCCACTCGGGGGAGCCGCTCACGATCTTCAGTGGCATGCTCTTGTATGACGGCATTTAAAATCCAATCCACCTGACTGGGgatatttcatttgaatgagACACAAGGGGGTAATAAAAGAGCTGGCGATTAACCATGTTCATCCTCAACAAAAGAAGACACTGaatggttgtttttatttttatttttatttttgatatatatatattttttaatccgATTGATGGTTTAAGACCTGTTTAAGACGTGGGGGGGAGAAAGTGATGTATTAACAACTGAACTCTACCTGGATACGCTAGGAAATGCTTGTgggatccccccccccccccccccccaattcaGACAAAGGTGTGAGAGGAATGCTACTGCAGTCATGATCTATAACACGCACTATTGGCAATGAATTATGAATAATCTTCCATTTGCCAAAGCTGGCCTCCTGGCCGTGGGCACCTCACAGTAACGCTCTGTGATGTAGCAGTAAGGTAGTAACCAGGTGCAGTAAGGCAGTAACCAGGAATGAAGAAGCGTTTCTGTCTtgcaggtaaaataaatatatatatgctgagACGATTCAATTTTTTGGGATAATGTCATGTCTGTGTGCCCCTCTGTGCCTCAAGACCCTCACTCCGAATCTGATGATCGCAGAGAGATTGGAAAGCCATATAATCTTGCCTTTACCATGCCTTGCCTTTCACTGTACTGTTATCCTTTGTAAACCGTCGAACCAGCATATTTCTCAGTACCAGTGGTCTCCCACCACTTACTAGAGGAATTTTGATCAGGGGAGAAAATCCATGAGAATCCTCAACAACCTTTGCATTCTGGTTGAGATTACTGATCTGGACAACAAAGGAATCTAGTTCATTTTGATCCAATAAAAGCTTAGAGCTTAGAGTCTGATACTGTAATACAGGCTACTGTATGGGACGACCAGTCCTGTGATTCCTTACCCGATTGTTCTGAACATGATGGGATGGTGTTTATTTGTCGTTATTTGTTATGCAGAGGTTATGCTCGATTTAAAGATTTCatgtatttccatttaaatgcaattgtaAACCCCCATCCTGTCTCAAAATATCCCCGATTGAGCCACAAGATCTATTGTGTCTCTTATGATCCATTCCAGAAACAATGACCTAGTTTGATTGTGCCTCTGTAGTAAGTCACTACTGCTCGTCCCAGCTGGTAGTCTTACCTTGGAGATGCAATTTCCCACTCTCCTTTATACAAGATAAAGTTTACTACTAAATGCAgactttttatataaaaagagGCATAGGAAACTATTCAgtattttctaaaatgtgtaaCTGTCCCCCAGTCTGTTGCCTTTTACAAACAGTAGGTAACTATTACGATGCTGTGGTAAAAACATCCTTTTGAATGTACTTGCAATTACACCTTTAagctttaatgaaaacaaatactaaaagcATTCAACAGACGCGCACTGAAAGTTTGCACTACTGTTGAACATCTCTCAACCGTTTCAGTAATTAAGAGCTTAACCCCTCTTAATGATGTTTAACTAATTGCAATGTCACAACTTGAGTGATTACATCTGAAGGAAACTGACAGCTTTGACCTGCACTCTCACTCTCCTCCTGACAGATTCTATCCCTAACAGCGAAGTGGATAAGACCTTCTGATGGAAACTGTCGCCATTTAGTCAGTAGTGTTTTGTTTACACACAAGAGGAGAGCATCAATGGGTCAAAAGTAACATAAAGACACGGCTAATTAAATTCCGCCAAAGAAACTGAAACGACGCAAAACTAAAGAAAACCAAAGATTAACAACCTGTACTGGTGCTTTAATAAATCCTTCTATTTaatccagtttttttttatttatttcacattaataGTGGTGTTTTCTCCTTGGCAGGGAAACAATACATGAAAATTTAAGCAACACTTTgtataagaaaagaaaaaaaatatttagtttttttgtaccTTTAGTACGCAATAAAAGTTGAGTTATTTGTAAGGCAGAGGGGTGTATTTCCCTTAGAGTAAGTCATTATGTTATTTACCACATggattaaatgaatacatattcgGCAAGCCTGATATTCTTAACCTCCACATATACCACTTGTTGTCCACTTGTTATTTCCACCCAGTGGAAACTTGCCACCAAGCATTGGTTTTGTAACTTGTGGTTGGCAGATGAGTTGCATTTTTCCACAAAATTCTTGGTACATTCCCTGTAAGTTTTATCCAGGCTTAGTCACTGCGACATCATCATATTTTTTGATATTAGAACCATCTGTGTCCAATTAAAATTGAATGATGATACATTGGAGGTCATTAACGTCTTACATGGTGCATAGTACAATTGCAAGAAAAAGGTtgataatagtaaaataataagtcatttcaatatttgttgCAACTTTGCAGCACTGTGTTGGTTCATGACAGTGTTTGTACTGTGCTAACTTACACAATTTTATTAccaaaaagcaacaaaaaaggaaaactttttagtttttcctacTGGTGAAATCAAACATGGCTGTACATTTCTATGATTTTTTTCTGATATCTCACAATGATGTGTTATCTCCATGTTTATCTGGCAACACGTGTGGTTCaaataaagatatttaattttacacacTTTTTA

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3352 lncRNA upstream 183952 16229935 ~ 16231498 (+) True G2755
TU3309 lncRNA upstream 329458 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 330584 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 382515 16032708 ~ 16032935 (+) True G2698
TU3260 lncRNA upstream 510630 15904483 ~ 15904820 (+) True G2681
TU3409 lncRNA downstream 1326 16429034 ~ 16430555 (+) True G2797
TU3454 lncRNA downstream 165556 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 171350 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 440591 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 613405 17041113 ~ 17042564 (+) False AMCG00003744
AMCG00003719 mRNA upstream 126748 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003720 mRNA upstream 149752 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003718 mRNA upstream 205173 16207847 ~ 16210277 (+) True AMCG00003718
AMCG00003715 mRNA upstream 254368 16136846 ~ 16161082 (+) True AMCG00003715
AMCG00003713 mRNA upstream 336135 16071552 ~ 16079315 (+) True AMCG00003713
AMCG00003730 mRNA downstream 90398 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003729 mRNA downstream 119364 16547072 ~ 16569703 (+) True AMCG00003729
AMCG00003733 mRNA downstream 148680 16576388 ~ 16589499 (+) True AMCG00003733
AMCG00003737 mRNA downstream 224126 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003738 mRNA downstream 265862 16693570 ~ 16699348 (+) True AMCG00003738
TU3283 other upstream 375810 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 1995718 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3258823 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3372853 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4838121 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1254109 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1710047 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1718952 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2940485 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 5121493 21549201 ~ 21549533 (+) True G3751

Expression Profile