RNA id: AMCG00003732


Basic Information

Item Value
RNA id AMCG00003732
length 588
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00003732
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16570530 ~ 16576587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGAACGGCTGCTGCAGGAGTTGGTGTTGGTGCTGGCGGTGGTGCGGCTGCGAagagagagagacgccgGCAGCAAATGCATCATCTCCATGAGTGGCAATACCACCACCGTGCAGGACCCCCGCAGCCCACAGTCCCGGCGCTCCTTCAGCTTCGACCACGCCTACTGGTCGCACAGCGGCTTCGCCCGGGACCAACAGGGCCGCTTCGTCCCAGAGGAGCCCAGTAGCCACTACGCAGACCAGAGTTCTGGAAGGATACGGTGTAACTTCCATGTAGCCTCCCTTGTCTTCAGAGTTGTGGGTGAAAAGAGAGTTGGGCTGAACGTGGTCCAGGGCGAGCTGAGCCTGACATCTCCCGTTTCCGACCCCGTCCCGCAGAGCACCGTGTACAGTGACCTCGGCCAGGGGATTCTGGAGAATGCCTTGCAGGGCTACAATGCTACATTGCTGGCATATGGACAGACGGGCTCGGGAAAGAGCTACACCATGGTCTTTTTCAGCATGTTGGAGATCTACAATGAACAGATTACAAAACTGGAATACAAGAGCAAATATGGTTCTTATGACAGACATCACATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3373 lncRNA downstream 320047 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 484535 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 485664 16079399 ~ 16084866 (-) True G2720
TU3281 lncRNA downstream 537608 16032687 ~ 16032922 (-) True G2699
TU3278 lncRNA downstream 540344 16029424 ~ 16030186 (-) True G2697
TU3452 lncRNA upstream 9475 16586062 ~ 16586266 (-) True G2832
TU3456 lncRNA upstream 11482 16588069 ~ 16588293 (-) True G2834
TU3480 lncRNA upstream 31251 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 291745 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 291745 16868332 ~ 16870943 (-) False AMCG00003742
AMCG00003731 mRNA downstream 27009 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003728 mRNA downstream 128004 16429027 ~ 16442526 (-) True AMCG00003728
AMCG00003725 mRNA downstream 251097 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003726 mRNA downstream 270138 16292357 ~ 16300392 (-) True AMCG00003726
AMCG00003724 mRNA downstream 302027 16266900 ~ 16268503 (-) True AMCG00003724
AMCG00003736 mRNA upstream 16849 16593436 ~ 16597326 (-) True AMCG00003736
AMCG00003734 mRNA upstream 30823 16607410 ~ 16628401 (-) True AMCG00003734
AMCG00003735 mRNA upstream 67773 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003742 mRNA upstream 293643 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003741 mRNA upstream 303449 16880036 ~ 16881122 (-) True AMCG00003741
TU3242 other downstream 978800 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1759199 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2557509 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3459402 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3535041 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1365990 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1570073 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2848376 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2867429 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2867429 19444016 ~ 19506753 (-) False G3523

Expression Profile