RNA id: AMCG00003733


Basic Information

Item Value
RNA id AMCG00003733
length 2550
RNA type mRNA
GC content 0.58
exon number 18
gene id AMCG00003733
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16576388 ~ 16589499 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCTGCTGTGTAAAAGCAAGATGGCGGCCGGGGGGCTGAAGGTGAGGGAGGAGCAGCAAAGGGGTTTCTATGTGGAGGGGCTGCGGACGGTGCCATGCGAGAGCTATGCCCAGATCGAGCAGCTGATGGAGCAGGGCACTCGCAGCCGCACCACCGCCAGCACCAACACCAACTCCTGCAGCAGCCGTTCGCACATGCTCCTCACCGTCCAGCTCAAACAGATCTTCTCCAAGGAGAACATCACCAAGCAGTCCAACATTAACCTGGTGGACCTGGCGGGCAGTGAGAGGCAGAGGACCGCGGGGTCGGAGGGGGACCGGCTGAAGGAAGGCATGGCTATCAACCTGAGTCTGACCACGCTGGGCAATGTCATCAGCTCTTTGGCAGATGTTGCTCTGGGCAAGAAAGCCATTCACATCCCATACAGAGACTCCATCCTCACCAAGCTGCTGCAGTCGGCCCTGGGAGGCAACAGCCGGACTGTCATGATCGCAGCCCTGAGCCCTGCTGATATCTGCTATGAGGAAACACTCTCGACGTTACGCTTTGCAGAGAGAGCGAAGAGGATCCAGAACAAGGCCGTGGTCAACGAGAGCCCCACGGAGCGGCTGATCAAGGAGCTGAAGTCCGAAAGCGCCAAACTTCTGCTCCGACTGTCCAAACTGGGGCAGGACGGACGGAGAACCGAGGACGAGACAAAGGAGCTGCGGCTGCTGCTGACCCAGAATGAGCTGCAGATCCAGGCGATCCAGACGCTGTGGCAGCAGCACCTGCAGGAGGCGTTGCAAGACTGGGAGCTGCAGTACGCCACCATCACGCAGGCACACAACCCGccggcgcacacacacacactggcccTGTGGCTGCAGAGAAAACGCCTTCACAGATTAATCACTGTAGTGTCCTATACCGAGAGGCGAATGATGCAGACGTACCCTTACATCCTGAACATCAACGAAGACCCCCAGCTCTCAGGAGTGGTGAAACTCTTTATCCAGGACGGCGAATGGGAAATCGGTCTATTGGACGGCACTCCCAATGTGATCACCATCAAAGGTCTGGGCATCCAAGAGAAACACGCCACCTTTACAAACACTGCTCGCAGAGTGAACATCACTCCCCGGTCTGAGGCCAAAGTGATTGTGAACGGAGCCCCCATCTCTAACAGAACGGAGCTGAGACATTTAGACCGTCTAATCCTGGGATCCAACAGCACTTACCTGTACATCGGCTTCCCCTCCGACCGCAGCGATGAGGACTGGAGCCGCTACGACTACGACTACTTCCAGTCAGAGCTGGCGGAGGCCGAAGGGTTTCATTTAGGGAAGCTGGGTGAGACTGGTGCTGCGGACGGCCCAGTGAACCCCAGCTTGCTGGCTGTCTTCCACGACTACATCAAGGTCATGCCCATGGTAGCAGAGGCAAACCAAATCAGCCAGGAGCTCAACAGGGGAGTGGAATTCAAGTTAGAGATCAAGAACCTGGCCATGTCCGACTCCAAAGGCCACGATCTGGAAAAGGAAATCGTCATCAAAGTGACACTCAGAGAAACAAAGCAGGTGTGGGTGTGGTCCAAAGCCAAGTTCGTGAATCGCAAGTTCCTGATGGAGGAGCTGTACCAGCAGCAGGCGGAGGGGGGTGCTGTCAATGTGGGGCCCGACAGAGACCCCTTCTGGGACCCGCTGGAGCCGGTGCACCTGGGCTGTGCACACATCTGGCTGCAGTCCCTGGCCTTCCGCATCCGCCTGGAGGAGCAGCTGGAGGTGCTGGGCTCCCAGGGCGGGGAGGAGGCCCTGCTGCAGGTCGAGCTGGTCCCCTGCTCCCGCGATGGCCAGGCCCTGGGGGAGGATGACATCATGATAGACCCCACAGAGCTGCTGGGCCGAAGGTTTGACTTCCAGATCCACGTGGCGCGCTGTTTCGGGGTGCGCTGGCTGAAGGAGGCCAGAGAGAGGGGCGTCCAGGTCGGGTTCAGCGTGTTCACTAACCCACAGCCCTTTTACACCGCACCTGTTTGGCACAACGTGAATCCCGTCTTGGAGCACAAAGTGCAAGTCACTGTTCCCAGCGTGTCGCAAGACTTCCTCAACTATCTGCAGACCAACGCCCTGGTCCTGGAGCTGTGGGGGCTGCAAGAGGGCTGCACTGAAAAGACCTCTCTAGAAAACGTGCTGGTCACTGAGGAAGGCAGCTTCATCATTGATGATGCCAGGACATCACCGTCCAGCAATGCTAACGCTGAACTGTGCAATGGCAGGGGCAGCGCCTACAGTCTTGGCCTGCCCAGTAAAGCGGAGCGGAGGGGCAGCCTGAGGACCAGCTGTGACGCAGAGTTTGCCCGAGCTCTCAAAGTCTTCTATCAGAGCATGAATGCAGTCAGGGGTCAGCTCCAGAGGCTAACACAGCACAGGCCTGGAGGCTTTCTTGAGGAGCAGGGGAGGATGCTGAGAGCGTTCGGCGAGCAGCTGGAGGGCTGTGTGACCAAGCTGAAGCAGGACGTGGCCGCCATCGTGAGGAGGAAGCGGGAGAGGTCTGGGGTCTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3409 lncRNA upstream 145833 16429034 ~ 16430555 (+) True G2797
TU3352 lncRNA upstream 344890 16229935 ~ 16231498 (+) True G2755
TU3309 lncRNA upstream 490396 16085140 ~ 16085992 (+) True G2721
TU3303 lncRNA upstream 491522 16081182 ~ 16084866 (+) True G2719
TU3280 lncRNA upstream 543453 16032708 ~ 16032935 (+) True G2698
TU3454 lncRNA downstream 3765 16593264 ~ 16597369 (+) True G2833
TU3458 lncRNA downstream 9559 16599058 ~ 16599329 (+) True G2836
TU3493 lncRNA downstream 278800 16868299 ~ 16934020 (+) True G2861
TU3513 lncRNA downstream 451614 17041113 ~ 17042564 (+) False AMCG00003744
TU3591 lncRNA downstream 618536 17208035 ~ 17210041 (+) True G2945
AMCG00003729 mRNA upstream 6685 16547072 ~ 16569703 (+) True AMCG00003729
AMCG00003730 mRNA upstream 53802 16518106 ~ 16522586 (+) True AMCG00003730
AMCG00003727 mRNA upstream 148680 16415450 ~ 16427708 (+) True AMCG00003727
AMCG00003719 mRNA upstream 287686 16287662 ~ 16288702 (+) True AMCG00003719
AMCG00003720 mRNA upstream 310690 16258454 ~ 16265698 (+) True AMCG00003720
AMCG00003737 mRNA downstream 62335 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003738 mRNA downstream 104071 16693570 ~ 16699348 (+) True AMCG00003738
AMCG00003739 mRNA downstream 258295 16847794 ~ 16850839 (+) True AMCG00003739
AMCG00003743 mRNA downstream 283144 16872643 ~ 16877245 (+) True AMCG00003743
AMCG00003745 mRNA downstream 426165 17015664 ~ 17029628 (+) True AMCG00003745
TU3283 other upstream 536748 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2156656 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3419761 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3533791 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 4999059 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 1092318 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1548256 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1557161 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2778694 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4959702 21549201 ~ 21549533 (+) True G3751

Expression Profile