RNA id: AMCG00003734


Basic Information

Item Value
RNA id AMCG00003734
length 4206
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00003734
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16607410 ~ 16628401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTCTGCGTTCTCCACAGCCCCCTGCCCACATGGACGAAGAGGCGACACAGAGGGTTGAGACAGCGGGGCAGGTCAAAGGCCGAGTGGAACCCCAGAACAACGTGGGTCACAGACCTCGAGACACGGCCGCTCAGCCCGCCGACGAGAACAAGAACCGGCTGGAGGTGTCGCCGACGCAGTGCCAACGCTCCCAGCAGGACACGGTCAACAACAACGAGGAGCCCATCACCACCACTGCCAgtaacatcaacaacaacaggaagGCCTCCTCCACCCCCAGTCCTCAGCCTGCCACCAGCCCCGTGACGCCAGCCCAGCGGGGCGCCGACACAAAGGCCAAAGGCTCAGGAGGCTTCCCTAAGAGCTCCGAGTGTCCATCCCCGGGGAGCATCTCTGACAGCCCTGAGGGCCTCATCCCTGAGAAAGGCGTCCCGTGCATCTCCTCGCGTCCACAGGAGAAGGGACAGTGTGGCCCACTGCAGGCCCTGCTCTCCTCCCTGCAGGGCCTGGGCACAGAGAGCGACTACCTGCTGCCCAGTAGCCTCCAtcagATAGCCGAGGCTTATTTCCATGAAGAAGACTATGAAAAGGCTGTGCGTTTCATCCAGCTGGAGAGATTGTATCATGAGCAGCTTCTGGCCAATCTGTCAGCCGTTCAGAAGCAGTGGGAATCCAAACGGAATTCAACGGCCTCTCTGGTGAGGCAGTCTTTGGGGAAGGCCCTCCTTGGGGATTTAAGAGAAGAGGACCTTGCCACTCTGACACAGCTGTGCACGACACACCAGAGGCCTGCTCTCGTCATCCCAAAGtCTGTTGCTGTTGACAATGCGTTGAAAAACAGCTTGATCACCAAGAAGCTCCCTGGAGAAAACAAGAAGCCCAACTCCAGCCTTCCTGTATGCGGCGCAGATAGCATCACGGCATCAGAGCAGCTGGGCATGTCCGAAGCAGTCCCCTTCCCCATCCCTGCCCCTGGCTCGTCCGGGGGAAGCCTGGGAGAGGAGGCGGGTGTTTCCCTGGCCGGCCAGCAGATGGGGCTGCAGGACCGAGTTGTCTCCACTCAATGGAGCCCCTCCGCCCCGATTGGCCAGCTGTGCTTTGACTCTTTGCCTGCTGGGAGCGTTGTGGGGGAGGCCGGCTCTTTGCATCCAGATGCTTcagccacagcagcagcagcagcagcagctgagcAGAGATCCCCTGAAGAAGGTCTGACGGCAGCACCGGTCTCAGGAGAGCgacaggaggagggaggggaggggaaggaggaggaggattcAACAGGGCAGGAGGACTCTGGGCCAGGCCTGCCTCTCCCTGTGGCTGCGCCCTCTCCCCCGGCATGTGAGCTCTCGCAGACCCGCAGCAGGCAGGAGCAGACCGGAGATGGGGCTCCGAGAGTAGAGACTGAAGGCCCGGGTGCTCCCTCTCCTTCTTCACTGGACTCCAGGGACCCCGGGGACTGCGAGGCAGGGATTCAGGCTGCCCCTCTTCAGCAGCCCTTGGAaatgagcgagagagaggtCACAGAGGAGGGGGGACTCACAGTGGAGATCCCCGACACAGAGCAGAACATCAGGTgtggagaagaggaggaggaggaggaggaggaggaggtggaggaggaggagggtgccCCGGGGGAATCCCCAGCCGCAGAGCAGGGGACCCCCAGCGCTGCAGAGGAGCCCTCGGctgagctggaggaggaggctgtGGGGCTGGGAGACTGGGTTCCTTCCCTGGATGACCTGGCCAAGCGCATCCAGATCGAAGAGTTCACTCCCGCAGAAGGCCTAGTGTCCATCCTGAAACGACGGAGGTCTCTGGACGGAGCCGAACAGCCCCCGCCACCCCCCAAGCAACCGTCCAAGCGCAAAGTGAGGTTCAGAGAGCCTGAAGACGGTCTCGATCAGGAAGAGGTGGGTGGCGACtcctgcctgctgctgctgctgctgtgcgtGGCCACGGTGGTGATCAGCATGGGCGGCACGGCGCTGTACTGCGCCCTGGGAGACGTGGAGTCCACCGTGTGCACAGACTTCTCACACAACATGGACTTCTACTTCAGCCAGATGCAGCACGGAGTGAACGAGCTCAAGCACTGGCTGTCCCCCGGCTCCTAGCGCGGCTCGGGGTGCGGGGAGGCGGCGGaggaggaagtgtgtgtgtttttcgcGTGGGGGAAAGGGGTCTGTTCTCGGTCTTGTCTGTGGctctttctctctgccccccaccccccatcccccttccTGGTGAGAATGGAGATGCCGTGACTGGCACAGATGCTGGCGTCTCGCTCACCGTCCAGCGTCTCCGGACCCGAGGGAGTCCAAATCCCGGCGTGTGTCGTACTAGCAACAGACCCACAAGTTTGATCCGTCTTATTGGCCACGGATCAGCGCCGGGGACTGCAGGGACACGACTGCCATGGTGGAGCTGAGCTGGGCAGAGACGGCCATTCACTTTCAGCGCCATTGTTCACATTTGACAAAGGCAAGCGCTGTTGAAAATGGGCAGAGTGGAGACACACTGGACCCACATGCGTGCTGGGAGCGTTTCCACACAGGCCgggacaaaaaaaacagccacatgGCTAAAGCCGGGTTTCACGCATCAATGAAAAgaagcagaacagaaaaaaggaatatattattagtgtttagtttaaaacattaactttttaacagggaaaaactttttttttttttttaatcttttttttatcttagGTCTCTTCAAGATGTGTGTTCCTCTCAGGAGGTTGATGGTGGTTGACTAAATGGCATTATCCTTCTTTTGAATTAAGTAGCCTCTTAAGTAGCAGTGGTCTGCAAGGCCGGAAGGATCAGAAGACTCTTTTACTCCACAGAGTGCACTAAGTGATTATTTTCAGCACGTCGGAGCAGAAAAGCAATATGTTTAAacgatttgtattttttttaagtctgtgGTCAGCTAGGAAATAGAATGAGATGAAATAATGGCAAAAGAATACCAAATGCTCAGGCTAACAagtcttattattgttattcaaatTACTGTAGTTACCTCTCGTATTGGGGAGCtgtcttaattttaattaggCTTCTTTGACACTGATGGAAGTAGactaacagattttttttcttttcagggtaAATAACACAGAAAATAGTCTTTTTGGCATAGAAACACAATCTGATCACAAACAAAAAGGCTCTGTCCGTAGCCGggccatacatatatatagagagagaaactttatatatatattttcttttaattcctcTGGCTGGATCAGAGGATTTGTTTCTTCATATTGTGCTGACTgagctatttattttgtgttaagtGTGGTAAGAAACATTGAATTACTTCAGCATCGTTTTTAAATCAGACACTGTATTGGTGTGCATGTGTTCCTTTCTGTACTGTTTGAACTTGATGTGATTACTGTACTTTGGGTTTTGTGTTAACACTTCCAAAACCAACatgataattaatttatttggattGTGCTTACTATTAAGGGGGAGGAAAACAAACGAGAAACATTGCCTGGTCTACAATTTTGACCACTTAAAGATGTCGATTtggaaattgttttaatgtcagCATAACACcaatgattttcatttttggggaaaacttttactttttaagtgTATATCATGTACTGACGGCTTTTGCGTCACCTCGTTTTAATGTATGtccagattttaaaaagaaaaacaattatgaaaaaaaatgttgtattgtaaATGCTGCAAAGGGAACATAAATCAGAAGGTTATCTTAAAAACTTGTGGGCGTTCCtttatttgaatgattttatttaCCAGAAGTATCAATTTATTAATCTCTTGATATTGCTTCCTTAGACATGCAACCAGAAGTCTTGCAGATTTCAGAGCTGTGGGTgggtgtctttttatttttgctgagtCATAGTTGGAcatcttgttcttgttttgattGGGTGGTGGTAAGACTGGAACAAAGAAGCGACACCAAACACCATCTGAGCAGTTTCCAGGAATAAATCACCACTGCATCTGAAGACTCTCCTCAGTAAATGAGTTCAGCTAACATCAGAGCTGAGACAATGGACTCTTGGTTAGAGTTCTATACAGAGGAATATAAAGTTCTGTATTAGATGTGTGATTTTCTCATAGGTTCTGAGCACAGACTGTAGGACTGAAACTATACTGTGTGGCCCAGC

Function

GO: NA

KEGG:

id description
K17581 CNST; consortin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3456 lncRNA downstream 19117 16588069 ~ 16588293 (-) True G2834
TU3452 lncRNA downstream 21144 16586062 ~ 16586266 (-) True G2832
TU3373 lncRNA downstream 356927 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 521415 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 522544 16079399 ~ 16084866 (-) True G2720
TU3529 lncRNA upstream 239931 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 239931 16868332 ~ 16870943 (-) False AMCG00003742
TU3539 lncRNA upstream 368389 16996790 ~ 16997604 (-) True G2903
TU3538 lncRNA upstream 413036 17041437 ~ 17042549 (-) True G2902
TU3581 lncRNA upstream 511556 17139957 ~ 17140224 (-) False AMCG00003751
AMCG00003736 mRNA downstream 10084 16593436 ~ 16597326 (-) True AMCG00003736
AMCG00003732 mRNA downstream 30823 16570530 ~ 16576587 (-) True AMCG00003732
AMCG00003731 mRNA downstream 63889 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003728 mRNA downstream 164884 16429027 ~ 16442526 (-) True AMCG00003728
AMCG00003725 mRNA downstream 287977 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003735 mRNA upstream 15959 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003742 mRNA upstream 241829 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003741 mRNA upstream 251635 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003740 mRNA upstream 255571 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003747 mRNA upstream 364718 16993119 ~ 16994022 (-) True AMCG00003747
TU3242 other downstream 1015680 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1796079 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2594389 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3496282 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3571921 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1314176 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1518259 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2796562 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2815615 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2815615 19444016 ~ 19506753 (-) False G3523

Expression Profile