RNA id: TU3480


Basic Information

Item Value
RNA id TU3480
length 2131
lncRNA type sense_over
GC content 0.46
exon number 3
gene id AMCG00003734
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16607410 ~ 16628401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCCCAGCCGCAGAGCAGGGGACCCCCAGCGCTGCAGAGGAGCCCTCGGctgagctggaggaggaggctgtGGGGCTGGGAGACTGGGTTCCTTCCCTGGATGACCTGGCCAAGCGCATCCAGATCGAAGAGTTCACTCCCGCAGAAGGCCTAGTGTCCATCCTGAAACGACGGAGGTCTCTGGACGGAGCCGAACAGCCCCCGCCACCCCCCAAGCAACCGTCCAAGCGCAAAGTGAGGTTCAGAGAGCCTGAAGACGGTCTCGATCAGGAAGAGGTGGGTGGCGACtcctgcctgctgctgctgctgctgtgcgtGGCCACGGTGGTGATCAGCATGGGCGGCACGGCGCTGTACTGCGCCCTGGGAGACGTGGAGTCCACCGTGTGCACAGACTTCTCACACAACATGGACTTCTACTTCAGCCAGATGCAGCACGGAGTGAACGAGCTCAAGCACTGGCTGTCCCCCGGCTCCTAGCGCGGCTCGGGGTGCGGGGAGGCGGCGGaggaggaagtgtgtgtgtttttcgcGTGGGGGAAAGGGGTCTGTTCTCGGTCTTGTCTGTGGctctttctctctgccccccaccccccatcccccttccTGGTGAGAATGGAGATGCCGTGACTGGCACAGATGCTGGCGTCTCGCTCACCGTCCAGCGTCTCCGGACCCGAGGGAGTCCAAATCCCGGCGTGTGTCGTACTAGCAACAGACCCACAAGTTTGATCCGTCTTATTGGCCACGGATCAGCGCCGGGGACTGCAGGGACACGACTGCCATGGTGGAGCTGAGCTGGGCAGAGACGGCCATTCACTTTCAGCGCCATTGTTCACATTTGACAAAGGCAAGCGCTGTTGAAAATGGGCAGAGTGGAGACACACTGGACCCACATGCGTGCTGGGAGCGTTTCCACACAGGCCgggacaaaaaaaacagccacatgGCTAAAGCCGGGTTTCACGCATCAATGAAAAgaagcagaacagaaaaaaggaatatattattagtgtttagtttaaaacattaactttttaacagggaaaaactttttttttttttttaatcttttttttatcttagGTCTCTTCAAGATGTGTGTTCCTCTCAGGAGGTTGATGGTGGTTGACTAAATGGCATTATCCTTCTTTTGAATTAAGTAGCCTCTTAAGTAGCAGTGGTCTGCAAGGCCGGAAGGATCAGAAGACTCTTTTACTCCACAGAGTGCACTAAGTGATTATTTTCAGCACGTCGGAGCAGAAAAGCAATATGTTTAAacgatttgtattttttttaagtctgtgGTCAGCTAGGAAATAGAATGAGATGAAATAATGGCAAAAGAATACCAAATGCTCAGGCTAACAagtcttattattgttattcaaatTACTGTAGTTACCTCTCGTATTGGGGAGCtgtcttaattttaattaggCTTCTTTGACACTGATGGAAGTAGactaacagattttttttcttttcagggtaAATAACACAGAAAATAGTCTTTTTGGCATAGAAACACAATCTGATCACAAACAAAAAGGCTCTGTCCGTAGCCGggccatacatatatatagagagagaaactttatatatatattttcttttaattcctcTGGCTGGATCAGAGGATTTGTTTCTTCATATTGTGCTGACTgagctatttattttgtgttaagtGTGGTAAGAAACATTGAATTACTTCAGCATCGTTTTTAAATCAGACACTGTATTGGTGTGCATGTGTTCCTTTCTGTACTGTTTGAACTTGATGTGATTACTGTACTTTGGGTTTTGTGTTAACACTTCCAAAACCAACatgataattaatttatttggattGTGCTTACTATTAAGGGGGAGGAAAACAAACGAGAAACATTGCCTGGTCTACAATTTTGACCACTTAAAGATGTCGATTtggaaattgttttaatgtcagCATAACACcaatgattttcatttttggggaaaacttttactttttaagtgTATATCATGTACTGACGGCTTTTGCGTCACCTCGTTTTAATGTATGtccagattttaaaaagaaaaacaattatgaaaaaaaatgttgtattgtaaATGCTGCAAAGGGAACATAAATCAGAAGGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3456 lncRNA downstream 19545 16588069 ~ 16588293 (-) True G2834
TU3452 lncRNA downstream 21572 16586062 ~ 16586266 (-) True G2832
TU3373 lncRNA downstream 357355 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 521843 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 522972 16079399 ~ 16084866 (-) True G2720
TU3529 lncRNA upstream 252093 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 252093 16868332 ~ 16870943 (-) False AMCG00003742
TU3539 lncRNA upstream 380551 16996790 ~ 16997604 (-) True G2903
TU3538 lncRNA upstream 425198 17041437 ~ 17042549 (-) True G2902
TU3581 lncRNA upstream 523718 17139957 ~ 17140224 (-) False AMCG00003751
AMCG00003736 mRNA downstream 10512 16593436 ~ 16597326 (-) True AMCG00003736
AMCG00003732 mRNA downstream 31251 16570530 ~ 16576587 (-) True AMCG00003732
AMCG00003731 mRNA downstream 64317 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003728 mRNA downstream 165312 16429027 ~ 16442526 (-) True AMCG00003728
AMCG00003725 mRNA downstream 288405 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003735 mRNA upstream 28121 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003742 mRNA upstream 253991 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003741 mRNA upstream 263797 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003740 mRNA upstream 267733 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003747 mRNA upstream 376880 16993119 ~ 16994022 (-) True AMCG00003747
TU3242 other downstream 1016108 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1796507 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2594817 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3496710 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3572349 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1326338 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1530421 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2808724 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2827777 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2827777 19444016 ~ 19506753 (-) False G3523

Expression Profile