RNA id: AMCG00003736


Basic Information

Item Value
RNA id AMCG00003736
length 1617
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00003736
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16593436 ~ 16597326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGTCTGGCCCCATGGCGACCTCCAGGTCCAGCAGCAGACCCTACGACATCATCGTGTTCGGGGCCTCGGGTTTCACCGGACAGTTTGTGGTGGAAGAGGTGGCCCGGACGTCGGCCGAGGGGCCAAAGGGGACTCTGAAATGGGCTGTCGCGGGCAGGAGCCGACAGAAGCTGGAGAAAGTTTTGGAGCAGGCCGCGGCGGTGCTGAGTAAGCCAGAGATCAagtcagaagtggatataatcGTCGCAGATGTTGGTGAACCGGACTCTTTAGCTTCCATGTGCAAACAGGCAGTTATTGTTCTCAGCTGTGTGGGACCATACAGGTTTTATGGCGAGCCCGTGGTGAAGGCCTGTGTTGAGAACGGAGCCCATGCCATTGACATATGTGGGGAGCCGCAGGTAGGTGTAGTGTCTGTAGCGCAGTGTGTCACTGCTTTAGGCTGGGTGGGCTGTGTTCCTGTGCTCTCGCGTGTTTGAGTTACTGTGTGGGATGTAGGAGCAGAAGTAGGATTAATATTAATCTCGTTTTGGTCAACAGACGAGGTTTATGAGAATCATCATAAAGTACAGTCGGTACACGTTGGAAGAGAGTCCAAAAGGTTTCGATGTGCAGTGTCATTCCATCAGAAGAGTTGACCTGAGGATTTTGTATGCTTTGGATTACCTTATTAGTGAGGATGGTGCATGGAGCACGGACGCTTGTTGCGGGgacattattttggttttgtgctgcagttgtgttaaaataatgtgatcccttttttattgttttaatgcatgttaACACATTCAGTCTCCCCTCCCCCAAAGGTAGTTTCAAAGCAGgaatattgtgtatgtgtgtgtgtacatgcatgCATGTCTGTATTTGTCTGCTTATTTTAGTTTCTAGAGGGAATGCAGCTGAACTACAACAAGGAAGCAAGGGAGAAGGGCGTGTATGTTATTGGGAGCTGTGGTTTTGACTCCATCCCTGCAGACATGGGGGTAATCTACACTAGAGACCAATTTAAAGGTACTGCAGTGACCGCATCATTAACTCCCTTCATTAATTGCGCTCCTACGTCTCAAACGACAGTATTTACGATGTTGGCTTAGCTGGGATGAGCAACGTTCTAGCGGCTCAGTTTGACATTCACACTGCGGTGGGTGGGTCGGATAGTTGCACTGATCGGTTCCCTTCTCCTGCTTTGAATGTTAACTTTACacctaaatacaaataactgcaatacctgaatcatttaaagatgaaaGCTTCCGGAATGACACACGATGGAGAGCTATGGGGAGGATCTGAATGAACGAGTGGTCACCTGTTGCTTTACTGAAGGAACAGTCAAAGGTTTCTCTGTAGGAAAACAGAATCGGAAAGGATGACCAGTACATTTGTTGAACAATCTGGCTTATGAAATCCAGgtgttgattattttctttccactgAAAACTGGAAGGCAGATCACACACACTTTCTATGCGGGCTGAACTATAATATTCAGATGTATACAGCTGTAGTGTGTTCTCATTTGCAGGGACAATGACAGCTGTGGAAAGTTTCTTGACCATAAGCAATGGGCCAGAGGGGGGTCACATTCACGATGGGACCTGGCAGTCCG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3456 lncRNA downstream 5143 16588069 ~ 16588293 (-) True G2834
TU3452 lncRNA downstream 7170 16586062 ~ 16586266 (-) True G2832
TU3373 lncRNA downstream 342953 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 507441 16085115 ~ 16085995 (-) True G2722
TU3305 lncRNA downstream 508570 16079399 ~ 16084866 (-) True G2720
TU3480 lncRNA upstream 10512 16607838 ~ 16616239 (-) False AMCG00003734
TU3529 lncRNA upstream 271006 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA upstream 271006 16868332 ~ 16870943 (-) False AMCG00003742
TU3539 lncRNA upstream 399464 16996790 ~ 16997604 (-) True G2903
TU3538 lncRNA upstream 444111 17041437 ~ 17042549 (-) True G2902
AMCG00003732 mRNA downstream 16849 16570530 ~ 16576587 (-) True AMCG00003732
AMCG00003731 mRNA downstream 49915 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003728 mRNA downstream 150910 16429027 ~ 16442526 (-) True AMCG00003728
AMCG00003725 mRNA downstream 274003 16308233 ~ 16319433 (-) True AMCG00003725
AMCG00003726 mRNA downstream 293044 16292357 ~ 16300392 (-) True AMCG00003726
AMCG00003734 mRNA upstream 10084 16607410 ~ 16628401 (-) True AMCG00003734
AMCG00003735 mRNA upstream 47034 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003742 mRNA upstream 272904 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003741 mRNA upstream 282710 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003740 mRNA upstream 286646 16883972 ~ 16892879 (-) True AMCG00003740
TU3242 other downstream 1001706 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 1782105 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2580415 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3482308 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3557947 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1345251 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1549334 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2827637 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2846690 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2846690 19444016 ~ 19506753 (-) False G3523

Expression Profile