RNA id: TU3530


Basic Information

Item Value
RNA id TU3530
length 2199
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00003742
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16868332 ~ 16871475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGTGGTCTACTTCAGTGCTAAGCTGAAGATCCTGGAGCACCGGCAGCAGCGCATCTCTGAGGTTCGGGCCAAATACGACTGGCTGAAGAAGGAGCTGGAGGTGACCAAACAGCACCTCATGCTGGAGCCAGAGAAGTGGACCAGAGAGTTCGATCTGCAGCAGACGTTCGAGGTGGACTCCCTGGAGTATCTGGAGGCGCTGGAGTTCGTCACCGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCGCACCTCATGATGATCACCTGCTTCGACATCTCCTCCCGGCGACGATAATGGGCATCTCTGGAGCAAGGGCTGATGGGACGTGTCGGACGTTGTGAAGGGAATGTGTACCAGGAGTGCGGACGCTTTCTGATGGAGATAAAGGACATTTTTAAGGGTTGGGGAGGGAGGGCAGGGAAGCAAGTAGCTGGGGGGGTTCCACGAAGATTGTTGCCATTTGAGGATCTATATTCTCTTGTTCAAGACTGAAAGAGCACTTTTGAGGAACTTTTGCATCTATCATTGTAAATACTGGTTTGCTTGCTTCAATGGAGAGGACGGGgagcaaaagaagaaagaaaaaagcaggaaAGAGAAGGGATGACAAGAAGATATATAAAGGACTACAAGTGCCTTGCCAAGACTTCAATATCCAAACATTTTCGGTATTTGTGTACAGATGATGCTAGCTTAtctagaagaaagaaaaaaagaaaaataagaaaaaaaatacagcttgtTTTACTTGGTGTTTGATCCCTCTGACTTGCTGTTTatcagtattttgtatttgtcttgtTATATACTAGTCAGGCAGCCTATTATGAACTCTTCAgtgtctttcttttgtttttgtttttgttttttactctcTAGATTCTAAAATACTGTATGGCCACTCAGAGTTGATGGTTTAAAAAAGGgtccaaaactttttttttcaattgtctTTGCTGGTTTGCAATATTCAGcaaattttaatgtaaaatgactACACTGATATAATTGTTGTCAGTGCCCAAATGATTGAGCATTATATTTCCCCAAGTGACTAATGCTGGGACAGTTTCAGACGTTTAAGCTTTTAAATCAACGGCAAACCAAACAGTTTCTTACATCTTCTAACTGATATATGGTACAATCTGAAGTCCAATAGCTGTAATACTCATACTCCACTGCCTAAAGCAGTTCTGGACGAGTGTGGAAACACTGAACACCAAGAACTGAGAAGATTTCTGCCTTTGCATCGAAACATCACCGTAATGCCCTCGGTGGATTCTTGGTTCACTTTCATTGCTACAGTACTGTACTTGTTTgtcagtatacagtatataaacaaTAGTAGTTGACCTCCACACCCCAGCTGATCGTGTCCCTGTCGCATGAATCAAAGGAGAATCCAGTTCAAATGTCTCTTGCTGTGTAAAGACAGCGTCCAGGCCGGTGAGTCGACTCTGTGTGGTCACACAGCAGTGGTGCGAACACTTCCTTAATACTTGTTGATATATGGTGCTTGAGGCAGTTTCTGCtcttaatgtttatatatagctTGTTTTCTATACTAAATTTACCCCACCTGCTCATTGGCCTTCACCCTATAACAGCTGGAGCTGCTGtgattaaccccccccccccgatccATAGTAAAGTATGAAGgacataatttatttgtaaactcAGGATGCTTATGTTCCACAAAGTTgcttgtattttataatttatttacccATTATGGTTTGCAAAGTGCTATGCATTAAAAACTGTACAGTTGCTAAACccatttcatataaatatatataaatatatatataaatatattattattatttttctgcaaaaGCACCTGCCATTGAATCACATTGTAGGGTCTGGTGTATTAAAGCAAATGTGGACGAGTTGTGGCTCACAGACAGAGCGCCGGTCACAGTGAACTCTGTGTCTCTGTTAGTGTTTTTTGACGCACTCCATACACATCCCCACAGTAACGGTCTGATCTTTGAACTCTGAATTCATCACGCGGTGTCGTACGCAGTATTCCGTTAAGAGATTGTCAGTTTTGGAGATCTAAATGTCTGTTCACAAATGGTTGTGAGAAGaagtgttgattttttttttttttttaatgtcaaagtgaatttatttgtctttcattttgtcTTGAGAAGaaatttatatatatcaaatcCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3480 lncRNA downstream 252093 16607838 ~ 16616239 (-) False AMCG00003734
TU3456 lncRNA downstream 280039 16588069 ~ 16588293 (-) True G2834
TU3452 lncRNA downstream 282066 16586062 ~ 16586266 (-) True G2832
TU3373 lncRNA downstream 617849 16247935 ~ 16250483 (-) True G2765
TU3310 lncRNA downstream 782337 16085115 ~ 16085995 (-) True G2722
TU3539 lncRNA upstream 125847 16996790 ~ 16997604 (-) True G2903
TU3538 lncRNA upstream 170494 17041437 ~ 17042549 (-) True G2902
TU3581 lncRNA upstream 269014 17139957 ~ 17140224 (-) False AMCG00003751
TU3620 lncRNA upstream 383328 17254271 ~ 17254765 (-) True G2973
TU3619 lncRNA upstream 386994 17257937 ~ 17259543 (-) True G2972
AMCG00003735 mRNA downstream 216830 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003734 mRNA downstream 239931 16607410 ~ 16628401 (-) True AMCG00003734
AMCG00003736 mRNA downstream 271006 16593436 ~ 16597326 (-) True AMCG00003736
AMCG00003732 mRNA downstream 291745 16570530 ~ 16576587 (-) True AMCG00003732
AMCG00003731 mRNA downstream 324811 16535239 ~ 16543521 (-) True AMCG00003731
AMCG00003741 mRNA upstream 9093 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003740 mRNA upstream 13029 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003747 mRNA upstream 122176 16993119 ~ 16994022 (-) True AMCG00003747
AMCG00003748 mRNA upstream 127837 16998780 ~ 17013774 (-) True AMCG00003748
AMCG00003746 mRNA upstream 172691 17043634 ~ 17047025 (-) True AMCG00003746
TU3242 other downstream 1276602 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2057001 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2855311 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3757204 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3832843 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 1071634 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1275717 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2554020 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2573073 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2573073 19444016 ~ 19506753 (-) False G3523

Expression Profile