RNA id: AMCG00003744


Basic Information

Item Value
RNA id AMCG00003744
length 4939
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00003744
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17032570 ~ 17042594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCGCTGAGCTGCGGTTGATAAGTCAAACTGGTACCCTGCGGTATCTCAAAACGTGCATATTTGCAGCAGGCGATCGTTAACCTGTGTTACTATTTAAAGTGCGATTTTGTTTTCTGGCGTCTGCACATGCGCACACGTGTCTCCATCTCCTTGCCAGTGATGGGAGAAGCAGACAGACGCCGAGGGGCAGTTCCTGTTTGAATGACATTGCATTTTCCAGTCCATGTACCATTTGTAACGTCCACatcctcacacacaaacacatccattgTTGTCCTTTCCCTCACTGCCAGTCGGGTTTCTATCATTACACATGTAAAAGCACGTCACAGACATCTGCATTACATACAAAGCTTCCATGACATGATTCAGGCGATCTTATCTtgagtatacatttaaaaccacgCAAATAGGATGTCATATtggtgtatttttcattttaaaggggGGACAACCAATAAATACAGGCTGTGTCAGTTCGGTCAGCATGATGGTGGCGTTGTTGGAGCGCAGATCTGCGGGATTCCAgccatcccattggtggagcagtgcagaactgcggacgtctgcgctacacgaacgccaCCGATATAGTCCGAAGTGAACCGAGCGTACTTCCGCTTTGCTGTCAGTCACTCCTCCGCCCCCCGGTCGTTTCCCACACTGCGCCGGCTGTAACTGGCGGTGCTGCTCGCCTGCTGGCTGCACTGTTGTAGGCAATGGCGGCGGACGGTggaggcggcggcggcggcggctccTCGCTGGTGAGATGCGGCACAGTGGTGTCTGTGGTTGGGCTGCTGCTGGCGCTGTGGTGGCGGTCGCCGGTGCCGGACCCGCTGGACGAGCGGCTGGACGCGGTGCTGTCCTCCCTGCTGAGAGCCGAGCGCAAGGCGGGCGCGGAGAGGGACGTGCACCGCCGCAGAGTGGCCATCGGTTTCGGGGGCTGTGTGGACATCATCGTGGATGGCGTCTCGCTGCTCAACAAGGTGGGCATCCGGCCCAGCGGTAGCCCCCTGCACCACGACTACATCGAGAGCATTGAGCAGATGTCTCAGAGCTTTGCCTACTTCTTCTCCCCCGGTGCTGCCTCAGAGCGCTTCGTGGCCAATGACACTCTGTTCAGAGAGCTGGTGGAGGCGTCCAGGGAGCTGCCGGGCAACCGCTGGGCGGTGGGGGGCAACGCGGCCGTCATGGCCAACAGGCTGGCACAGGAAGGCTGTGACGTTCTCCTGGGGGGCAGCTTCAGCCCGGATTTCAAGGACGTCCTGTCGCCCGGCATTACAGTGGCAGGAAACACCGTGGAGGAGCCCGATATCCACCTGATACTAGAGTATCCCTCTGGGGCTCAGTGGGGGGAGTACACGGCAAGGAGAGCCAACAGGTACATTGTCCACAGCGATGACCACAACCCCTTCCTGGACTCCATGGAGGACTTTGAGGAGCAGCTGCAGGACTTCAGACCTGACCTGCTGGTGGTGGGAGGCCTACAGATGATGGACAACTATCCCTTTAAAGAGGGGGAGAGGGAGGCACGTCTGCACAGTCTGGGGCGGCTGATGGAGGCAGCAGGGCAGGAGACAAGTGTGCACTTCGAGATGGCCTCCTTCGTGGACCGGGGTCTGTTGGCGGAGCTGCTGGGGAAAGTGGTGCCCCAGGCCGACTCACTGGGCATGAACGAGCAGGAGCTGCCCAACCTGCTGAGCCTGCTGAAGGAGGGCAATGTCACGCTTCTCTCGGACCCCAACCCCCGCGTGGCCACCGTGCTGGACCAGATGCGCGAGCTGTACCGCCTGCTGAACGCCGGGCCCAGGGACCGCCGCCTGACCCGCCTGCACGTCCACACGCTGGCATTCCAGGCCATCATCGTGACCCGCGGCTCCTCCTGGAAGAACACCATGTCGGCCACCGCCAAGGCCTCGCTCACCGCAAACCGGCACGTCTGTGGCTCGCCCGACATCAACCCCAGCAAGGCCAAGCTCATCATGGACGACTCCTTCTCCATCAGCCAGCAGGAGGGCAGCCAGCGCATCCCCTTCCTGGAGACCAAGCCCGTGTCCTGCTGGGAGGAGGCCGACTATGAGATCTGCGTGGCGCCCGTGCTGGTGTGCACCGAGGTGTATCAGACCGCAGGGGGAGGGGACAATATATCAGCGGCCGGACTGGTGCTGCAGATAtagcagggggaggggggggcgaGGTGAGTAATACTCAGgcaaaaaaacttttttcctgtttttaattcagtcaaCGAGATCATTCCCACCTCATGTGAATTACcctttattgtttgttttaccttttatttattttggttttggttgCAACTTTTTCCAGATCCAGTGCAATATCAGAGGAGcctatttttttggtttaaagaGTGTGGACTACATCCTGTGTTACTGTGAAACGctccagtgtttgtttttatcaccCTTAGTTTCTTCCTCTCCCATCTGCATTGGTCTTGGGAATTAAAATCCCTTCTCACACGAAAGCAGCTGCTTATTCCGAGAAGCCACTATCAGAGAAGGAACCATGTATGAATTGATCAAGAAAGCTGTGAAACTGCTACATACCTGTCTACATACCACACATGTATGCTTTCAGTgcttgtgtgttgtgctgtcctTGCCTTGCTTCAGTCTGTTTTGCGGGTTCAGTTTAATTATGCATCCCCTAATGAAGACATTGCGTCGCTCTCCTGCAGGCGCAAATGTCTTTCACTACACAGATGTtcatgtttgcttttattttgttttgtttaaattctgGCCATACCAACATTTAAAAGGGACCAACTTTGAAACTTTTTATCCTGGCTGGGAatgttaacataaataaatttgTGATCATCCAAACACCTTCAACTGAGGTTATTCTTGGGGTCTTTCTCGTTGTAAATGGGTGGGGTGGGGCAATCTAGTGGCACAGACCTAGTGGATTTGCAGTGACCTGTTCAGTGCTGGGCAATCAGTGCTCCACTCAGCCTGGTCCTTGGCGCTAGAGTTGCCTGTTATTCGATGCTGCAGTCTGTTCGCAGACCCTTGAATGTTAAAGTAAGATTGATGGGCTGCTCGGTTTGTGTGAACACTGCTTCCCAAAGACGACGATGCAGCTTTAATTTGCCCCCTCTCCCGCAGACTGGTGAAATCATTACAtccatattttttaatggtttcttttcttccttttccatTCCTTATAAATCATGCTAATCTGCGGCTGTCTATTTCATATTCATTGTTctcatttcttttttgtgactgatttaattttttcaggGTTGGTTTTCTAGATCACTCTTTTGGGAACTAATCATTTGTTCAGTGTTGTGCTGGAGATACCATAGAAACATGTAGCAGAACttgaaaaagtgaatatttcacattgaaaaaacaggataatatgaagaaaaaaaatactttgatttaCCCAGAGcaggatttagttttttttttttttttaagaaaaaacacaaaacctcaCTGAAATTTACATTCAGTAAGTGATTGTTCCAGTGGGAGATGGGGTGATTATaagcacacaacacaatactacACCCCAGAAAGGAAATGGAATGTTTAATGCGCCTCCTGTGCCTGGAAGTCTGTTTTACTGTGACAGAGCGAGTGCAGTGCGACAGACAGGAATCTCGGCTCTAAAAGGGAAAAGAGCTTCTCACACAGCAGAATGGGAATATGAAGACCAGGGCTGACCCTGTAGAGCCACAGTGCCTGCTCgttttattaaatgcaaactACTTGTCCTGGAGGAGAGCCGATGTGCGTTCTGTGAATACCGGTCTCCGTTTTCTGGTTTTGGTTCCAGATGAACTCTTGCTCCCATCGACTAATCAAATACACCTTGATGCAACCTTTATTAAATCTAATTAGAGCTCCTGAACAAGACAATTTGTTGTGCAGAAAATCTTATTAAACTCCTCCGTGAGTGCCAGGTTTTAGAGCTGCTCTCATGTAGGGGTGCAGTTCACTGAGCAGGTGTCTGGAATGTGATCAGATGAGCCGGAGAAGAATTTGCCATGTTTACGAGGGGAGTGTTTGAGGCCATGTACTTCCTAAACTTCTCTGTGCATCACTACTTGGTAACCTGTTAAGAGTTGTTTAGACAGCTTTAAGAGAGCGGTAGCAGCTCATTAAACAAGCTGAGGACACAGACTGTTTTTCTGCTTGACGAATGTCTTGCGAAAAACACACACGAAGCAGAAAGAATCTGAAACCCAGGTctgaataataaattataaaagctAGAAAGGAGCTAATTCAGTTCAAGctagttcaattaagggctcAAGGAAAGGAAAGGGAGTGAAAACCAACTCGGAACTAAGGCCGGGAAACCCTTGTAGGCCAGAGACACACACTACACTATCTTAGCTGGATCTGTGTGTGGAATCTGAAGTGTAAATCTGGCTCGGCCACATTTCTGTAACTAAACAGGATTTTGGTTTTCAGCTTCTGTGAACTGGCCACCACCCAAACACCTGGGATTTGAGCTGCAGTGCGGTGTATAGGTTTTGTCCACATTTAATCGTGCATTTTATATGAGATCAAGATCGATGCTCAAACCATACGTGCTGTTtttctagagcaggggttcttAACCTAGGGGTCGTGAGGAACATCTagcagtaaataaaaataacgaTATGACAAATCAAAATAAGTATTGGCAGTTAAATTCCAATTTAGGCCGCTGGTGATTTCAAGGTGGCTGTGAAATTCTGGAAAAGTTACCGATCATCACCTGCTTATGGATCAGAAAACCACAGAGAAGGACTGATGCCCAGATTATTGACACGTAGCTAAAGTCTTGATTACAGTCACTGAGTGCACTGTGGTGGGGGGATCCAGCAGACAAGTTCCTCTAGGGCCAGGGcgagagggggaaaaagtggGGGTTGAGGCAGGTGTGGA

Function

GO: NA

KEGG:

id description
K08074 ADPGK; ADP-dependent glucokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3493 lncRNA upstream 98550 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 433241 16599058 ~ 16599329 (+) True G2836
TU3454 lncRNA upstream 435201 16593264 ~ 16597369 (+) True G2833
TU3409 lncRNA upstream 602015 16429034 ~ 16430555 (+) True G2797
TU3352 lncRNA upstream 801072 16229935 ~ 16231498 (+) True G2755
TU3591 lncRNA downstream 165441 17208035 ~ 17210041 (+) True G2945
TU3614 lncRNA downstream 211672 17254266 ~ 17256450 (+) True G2967
TU3977 lncRNA downstream 1396212 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 1502390 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1902988 18945582 ~ 18946131 (+) True G3370
AMCG00003745 mRNA upstream 2942 17015664 ~ 17029628 (+) True AMCG00003745
AMCG00003743 mRNA upstream 155325 16872643 ~ 16877245 (+) True AMCG00003743
AMCG00003739 mRNA upstream 181731 16847794 ~ 16850839 (+) True AMCG00003739
AMCG00003738 mRNA upstream 333222 16693570 ~ 16699348 (+) True AMCG00003738
AMCG00003737 mRNA upstream 371623 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003750 mRNA downstream 35491 17078085 ~ 17104248 (+) True AMCG00003750
AMCG00003749 mRNA downstream 61670 17104264 ~ 17108278 (+) True AMCG00003749
AMCG00003752 mRNA downstream 119146 17161740 ~ 17205182 (+) True AMCG00003752
AMCG00003755 mRNA downstream 486803 17529397 ~ 17552735 (+) True AMCG00003755
AMCG00003759 mRNA downstream 534140 17576734 ~ 17577808 (+) True AMCG00003759
TU3283 other upstream 992930 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2612838 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3875943 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3989973 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 5455241 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 639223 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1095161 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1104066 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2325599 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4506607 21549201 ~ 21549533 (+) True G3751

Expression Profile