RNA id: TU3513


Basic Information

Item Value
RNA id TU3513
length 1452
lncRNA type sense_over
GC content 0.44
exon number 1
gene id AMCG00003744
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17032570 ~ 17042594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttaagaaaaaacacaaaacctcaCTGAAATTTACATTCAGTAAGTGATTGTTCCAGTGGGAGATGGGGTGATTATaagcacacaacacaatactacACCCCAGAAAGGAAATGGAATGTTTAATGCGCCTCCTGTGCCTGGAAGTCTGTTTTACTGTGACAGAGCGAGTGCAGTGCGACAGACAGGAATCTCGGCTCTAAAAGGGAAAAGAGCTTCTCACACAGCAGAATGGGAATATGAAGACCAGGGCTGACCCTGTAGAGCCACAGTGCCTGCTCgttttattaaatgcaaactACTTGTCCTGGAGGAGAGCCGATGTGCGTTCTGTGAATACCGGTCTCCGTTTTCTGGTTTTGGTTCCAGATGAACTCTTGCTCCCATCGACTAATCAAATACACCTTGATGCAACCTTTATTAAATCTAATTAGAGCTCCTGAACAAGACAATTTGTTGTGCAGAAAATCTTATTAAACTCCTCCGTGAGTGCCAGGTTTTAGAGCTGCTCTCATGTAGGGGTGCAGTTCACTGAGCAGGTGTCTGGAATGTGATCAGATGAGCCGGAGAAGAATTTGCCATGTTTACGAGGGGAGTGTTTGAGGCCATGTACTTCCTAAACTTCTCTGTGCATCACTACTTGGTAACCTGTTAAGAGTTGTTTAGACAGCTTTAAGAGAGCGGTAGCAGCTCATTAAACAAGCTGAGGACACAGACTGTTTTTCTGCTTGACGAATGTCTTGCGAAAAACACACACGAAGCAGAAAGAATCTGAAACCCAGGTctgaataataaattataaaagctAGAAAGGAGCTAATTCAGTTCAAGctagttcaattaagggctcAAGGAAAGGAAAGGGAGTGAAAACCAACTCGGAACTAAGGCCGGGAAACCCTTGTAGGCCAGAGACACACACTACACTATCTTAGCTGGATCTGTGTGTGGAATCTGAAGTGTAAATCTGGCTCGGCCACATTTCTGTAACTAAACAGGATTTTGGTTTTCAGCTTCTGTGAACTGGCCACCACCCAAACACCTGGGATTTGAGCTGCAGTGCGGTGTATAGGTTTTGTCCACATTTAATCGTGCATTTTATATGAGATCAAGATCGATGCTCAAACCATACGTGCTGTTtttctagagcaggggttcttAACCTAGGGGTCGTGAGGAACATCTagcagtaaataaaaataacgaTATGACAAATCAAAATAAGTATTGGCAGTTAAATTCCAATTTAGGCCGCTGGTGATTTCAAGGTGGCTGTGAAATTCTGGAAAAGTTACCGATCATCACCTGCTTATGGATCAGAAAACCACAGAGAAGGACTGATGCCCAGATTATTGACACGTAGCTAAAGTCTTGATTACAGTCACTGAGTGCACTGTGGTGGGGGGATCCAGCAGACAAGTTCCTCTAGGGCCAGGGcgagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3493 lncRNA upstream 107093 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 441784 16599058 ~ 16599329 (+) True G2836
TU3454 lncRNA upstream 443744 16593264 ~ 16597369 (+) True G2833
TU3409 lncRNA upstream 610558 16429034 ~ 16430555 (+) True G2797
TU3352 lncRNA upstream 809615 16229935 ~ 16231498 (+) True G2755
TU3591 lncRNA downstream 165471 17208035 ~ 17210041 (+) True G2945
TU3614 lncRNA downstream 211702 17254266 ~ 17256450 (+) True G2967
TU3977 lncRNA downstream 1396242 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 1502420 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1903018 18945582 ~ 18946131 (+) True G3370
AMCG00003745 mRNA upstream 11485 17015664 ~ 17029628 (+) True AMCG00003745
AMCG00003743 mRNA upstream 163868 16872643 ~ 16877245 (+) True AMCG00003743
AMCG00003739 mRNA upstream 190274 16847794 ~ 16850839 (+) True AMCG00003739
AMCG00003738 mRNA upstream 341765 16693570 ~ 16699348 (+) True AMCG00003738
AMCG00003737 mRNA upstream 380166 16651834 ~ 16660947 (+) True AMCG00003737
AMCG00003750 mRNA downstream 35521 17078085 ~ 17104248 (+) True AMCG00003750
AMCG00003749 mRNA downstream 61700 17104264 ~ 17108278 (+) True AMCG00003749
AMCG00003752 mRNA downstream 119176 17161740 ~ 17205182 (+) True AMCG00003752
AMCG00003755 mRNA downstream 486833 17529397 ~ 17552735 (+) True AMCG00003755
AMCG00003759 mRNA downstream 534170 17576734 ~ 17577808 (+) True AMCG00003759
TU3283 other upstream 1001473 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 2621381 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 3884486 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 3998516 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 5463784 11573731 ~ 11577329 (+) True G1989
TU3719 other downstream 639253 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 1095191 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 1104096 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 2325629 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 4506637 21549201 ~ 21549533 (+) True G3751