RNA id: AMCG00003746


Basic Information

Item Value
RNA id AMCG00003746
length 992
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00003746
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17043634 ~ 17047025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAAGTCACGAAAGCGGAAGTCGGAGATGCAGGCTACCGTTACTTCCGGTGTCTGTGTGTACGGAACCGCCCAGAGGACACACCGTGCTGCGATTCCGCACCGTTCACCGTGACGCACCGTATAGTGCGCGTAAAACAGTGTATACTACAATACAATAGCGTGTATTAAAGCACAGCGCACACACAACCAGCCGAAACCATGGATAGAAACCAAAACACTACAGCTTCATCCTCCAGCTGCGCCCCCCACAGCCCTGTTGCGCAGCCCGCCGTGGGGAGGCCGGGGCGGGAAGCGGAGGAAGAGAGGCCCACCAGGCCCCTAATGAAACTGGTTGAGTTCAGTGTCACCTGTCCGTCCCTGCTCAGGGAGCAGATGAAACAGCAGTATCTGGATATGAAAACCTGGCTGGCGCTGAGAAACCCAGTTTTTGCCGAAGAAACTACAGATCCCTCCCTGAGTGTCAGTATGGAGAATGTTGAGACGCCCTATGAAAGCCTGCTGTCGGACCTCCGTACCAAACAGCTAGCCGTTCATCGGCAAGTCTCCGTTGACCTGTGCCAGAGAATAGCATCCATCCAGAAGgaaaACCGAGAACTGCGATCCCTAATCGGCCAGGTTTCTAAGAGGCGCTTTGAACTGAAGATGGTGCTGCAGAGTCTCCTGCACACTCTCAGGACCCAAGCAGAGGTCAGGGAGAGGGCTGGGCGGATCACCGCTGACTCCCACACTGCCACGCAGGCCTATCTCGACCAGAGTTACCAAGTGGCGCTGACACTGCAAGAAGTCTTTCGGAGACTAATTCTGTGTGCAAAAATCAACTGGGTGGAAGATCCGAAACTCTTGAGCGCTGTGCTGTCTATGAAGGACAGTAATGCTTCGGAATAGATGCAAAGCTTgttagcatttttaaatgtttgtatctgttaaatattttattttaaattatatcacATGCCCTGGaagattttaataaatgttttgtctttctAA

Function

GO:

id name namespace
GO:0006996 organelle organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3538 lncRNA downstream 1085 17041437 ~ 17042549 (-) True G2902
TU3539 lncRNA downstream 46030 16996790 ~ 16997604 (-) True G2903
TU3529 lncRNA downstream 172159 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA downstream 172691 16868332 ~ 16870943 (-) False AMCG00003742
TU3480 lncRNA downstream 427395 16607838 ~ 16616239 (-) False AMCG00003734
TU3581 lncRNA upstream 92932 17139957 ~ 17140224 (-) False AMCG00003751
TU3620 lncRNA upstream 207246 17254271 ~ 17254765 (-) True G2973
TU3619 lncRNA upstream 210912 17257937 ~ 17259543 (-) True G2972
TU3865 lncRNA upstream 888815 17935840 ~ 17940712 (-) True G3170
TU3907 lncRNA upstream 1088354 18135379 ~ 18142681 (-) False AMCG00003784
AMCG00003748 mRNA downstream 29860 16998780 ~ 17013774 (-) True AMCG00003748
AMCG00003747 mRNA downstream 49612 16993119 ~ 16994022 (-) True AMCG00003747
AMCG00003740 mRNA downstream 150755 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003741 mRNA downstream 162512 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003742 mRNA downstream 172161 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003751 mRNA upstream 90223 17137248 ~ 17140382 (-) True AMCG00003751
AMCG00003753 mRNA upstream 158288 17205313 ~ 17229181 (-) True AMCG00003753
AMCG00003754 mRNA upstream 228617 17275642 ~ 17291950 (-) True AMCG00003754
AMCG00003757 mRNA upstream 422315 17469340 ~ 17513471 (-) True AMCG00003757
AMCG00003758 mRNA upstream 467491 17514516 ~ 17526657 (-) True AMCG00003758
TU3242 other downstream 1451904 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2232303 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3030613 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3932506 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4008145 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 895552 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1099635 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2377938 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2396991 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2396991 19444016 ~ 19506753 (-) False G3523

Expression Profile