RNA id: AMCG00003748


Basic Information

Item Value
RNA id AMCG00003748
length 336
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00003748
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16998780 ~ 17013774 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAAGATAAGGATTCAGCAGATGCTATGATATCCGCCATTCATGAGAAGATCCGCGACGCCTTTGATGTGTTTGACCAGGAGTTCAACAAGACCGTGGACGTGAGGTACAGACCCATCTCTGAGGATGTCCTGTTGCGTGCTTTTGAAgttTTGGATCAGAATAAAAAGGGCTTTCTGGAGCCTGAGGAGCTTACAAAGTACATGTCAGAGGAAGGAGAACCATTCACACAGGAAGAGATGGATGAGATGCTGTCTGCAGCCGTGGATCCGGGGAAGAATGTGATTCTGTACAAAGACTTTCTGGAGATGATGACCCTTGAAGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3539 lncRNA downstream 1176 16996790 ~ 16997604 (-) True G2903
TU3529 lncRNA downstream 127305 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA downstream 127837 16868332 ~ 16870943 (-) False AMCG00003742
TU3480 lncRNA downstream 382541 16607838 ~ 16616239 (-) False AMCG00003734
TU3456 lncRNA downstream 410487 16588069 ~ 16588293 (-) True G2834
TU3538 lncRNA upstream 27663 17041437 ~ 17042549 (-) True G2902
TU3581 lncRNA upstream 126183 17139957 ~ 17140224 (-) False AMCG00003751
TU3620 lncRNA upstream 240497 17254271 ~ 17254765 (-) True G2973
TU3619 lncRNA upstream 244163 17257937 ~ 17259543 (-) True G2972
TU3865 lncRNA upstream 922066 17935840 ~ 17940712 (-) True G3170
AMCG00003747 mRNA downstream 4758 16993119 ~ 16994022 (-) True AMCG00003747
AMCG00003740 mRNA downstream 105901 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003741 mRNA downstream 117658 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003742 mRNA downstream 127307 16870230 ~ 16871473 (-) False AMCG00003742
AMCG00003735 mRNA downstream 347278 16644360 ~ 16651502 (-) True AMCG00003735
AMCG00003746 mRNA upstream 29860 17043634 ~ 17047025 (-) True AMCG00003746
AMCG00003751 mRNA upstream 123474 17137248 ~ 17140382 (-) True AMCG00003751
AMCG00003753 mRNA upstream 191539 17205313 ~ 17229181 (-) True AMCG00003753
AMCG00003754 mRNA upstream 261868 17275642 ~ 17291950 (-) True AMCG00003754
AMCG00003757 mRNA upstream 455566 17469340 ~ 17513471 (-) True AMCG00003757
TU3242 other downstream 1407050 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2187449 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 2985759 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 3887652 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 3963291 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 928803 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1132886 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2411189 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2430242 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2430242 19444016 ~ 19506753 (-) False G3523

Expression Profile