RNA id: AMCG00003751


Basic Information

Item Value
RNA id AMCG00003751
length 384
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00003751
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17137248 ~ 17140382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCTCTACGATTTCGTGATGCAGAAGGGCGGCCACCTAGACGAGCCCATGGCCAAGGACTTCCTANNNNNNNNNNTGCAGGCGCTTCAGCACTGCCACACCCGTGGAGTGGTCCACCGCGACctcaagatggaaaacatcCTTGTGGAGAGCATCAGCCACCGCCTCAAACTGATTGACTTTGGCCTGGCGAGCCGCCTGCGGGATGGTTTCTACAGAGACCAGGCCGACCCAAGCCATTGCTGCCAGGGCCTTTTAATTGCACAGGTCAGCTGTCGTGTGCGCCGCAGTGTTAACAGGCCAGGCTGGCTTCGCGACGAGGAGTGGCCATCCTCCGTAAGGCTGGAGTGGCAGAGCAACCGATCAAATCAGCAGCAGTAG

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3538 lncRNA downstream 94699 17041437 ~ 17042549 (-) True G2902
TU3539 lncRNA downstream 139644 16996790 ~ 16997604 (-) True G2903
TU3529 lncRNA downstream 265773 16868332 ~ 16871475 (-) True AMCG00003742
TU3530 lncRNA downstream 266305 16868332 ~ 16870943 (-) False AMCG00003742
TU3480 lncRNA downstream 521009 16607838 ~ 16616239 (-) False AMCG00003734
TU3620 lncRNA upstream 113889 17254271 ~ 17254765 (-) True G2973
TU3619 lncRNA upstream 117555 17257937 ~ 17259543 (-) True G2972
TU3865 lncRNA upstream 795458 17935840 ~ 17940712 (-) True G3170
TU3907 lncRNA upstream 994997 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 998430 18138812 ~ 18142681 (-) True AMCG00003784
AMCG00003746 mRNA downstream 90223 17043634 ~ 17047025 (-) True AMCG00003746
AMCG00003748 mRNA downstream 123474 16998780 ~ 17013774 (-) True AMCG00003748
AMCG00003747 mRNA downstream 143226 16993119 ~ 16994022 (-) True AMCG00003747
AMCG00003740 mRNA downstream 244369 16883972 ~ 16892879 (-) True AMCG00003740
AMCG00003741 mRNA downstream 256126 16880036 ~ 16881122 (-) True AMCG00003741
AMCG00003753 mRNA upstream 64931 17205313 ~ 17229181 (-) True AMCG00003753
AMCG00003754 mRNA upstream 135260 17275642 ~ 17291950 (-) True AMCG00003754
AMCG00003757 mRNA upstream 328958 17469340 ~ 17513471 (-) True AMCG00003757
AMCG00003758 mRNA upstream 374134 17514516 ~ 17526657 (-) True AMCG00003758
AMCG00003756 mRNA upstream 415575 17555957 ~ 17565405 (-) True AMCG00003756
TU3242 other downstream 1545518 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2325917 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3124227 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4026120 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4101759 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 802195 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 1006278 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 2284581 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 2303634 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 2303634 19444016 ~ 19506753 (-) False G3523