RNA id: AMCG00003757



Basic Information


Item Value
RNA id AMCG00003757
length 3959
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00003757
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17469340 ~ 17513471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGAGGGCGGGCTCTCCAGTGGCGTCAGGCCCGGCCGCTGTTCCCAGTGAGGAGAATGTAATGGCTTGGCTGTAACCAGAATGATATcgcagagagaaaggggggaacTGGCTCGATTCTACACTGTCACCGACCCCAAAAAGCACCAGAAGGGATACACCGTTTACAAAGTCACCGCCAGGATCATCTCCAGGAGGAACCCAGAAGATGTCCAAGAGATAACGGTGTGGAAGAGGTACAGCGATTTCCGCAAGCTGCACAAGGAGCTGTGGCAGATCCACCGCAACCTCTACCGGCAGTCAGAGCTGTTCCCACCCTTCGCCAAAGCCAAAGTCTTCGGCCGTTTTGATGACACCGTGATTGAGGAGAGGCGTCAGTGCTCCGAAGACCTGCTCCAGTTTTCTGCCAACATCCCCGCCCTCTACAGCAGCCCCCAACTGGAAGACTTTTTCAAGGGGGGAGAAGTGCATGATGGGTCGGAGCTGATTGGTCCTGCCGAGCCGTTCTCTGACTTCCTCGCCGACAGCTTGTCCGACTGCAGTTCTGAAGTTCACAGAGACCTAAGTAGCATTGATGACTCCACGTTCACCAGCCAGACTGAGTATGGTGGGCTCTCCAGCGACAGCGATCTGATCTCTCTGGTGGTGGACACCGACTCCCTCGCCGAGCTCGACGATGGAATGGCCTCTGCCGGGAACTCGCCGAGAAAGATGCCGGGGGGGGGGCTCAGCCCGTCTCCGGAGCCCTCCCCCAGGATGGACGGGACCAGGGAGGAGCCTGAGAGCAGCCGCAACGGAGTGGGGGGAGCAGGCGGCGGTGGCGCCAGGGGGGGGCTGTTTCCTGGGGGCCTGAAGCCCAGTGTGGGAAAGAAGGACTACCTGGAGCAGGCCGGGGAGCAGATCAAGATGGCCGTGCAGAAGGAGGTGGAGCAGGACTTCGAAGCCGCCTTCTCTCTGTACAGGACGGGGGTGGACCTGCTGCTGCAAGGAGTGCAAGGTAACCGGCGCGAGGCTGTGAAGAAGAAGACTGCGGAGTACCTGATGCGCGCCGAGCTGATCTCCTCTCAGTACCTTGGGGCTACCGCGGAGGATGGCTCCACTCAGAGTATGCCTCCAGGCCCGCTAAGTTCAAGGCCCTCTTGGAACCCGAGCAGCCCTGCGGAGGAGCTGAAGGTCTTCAGGGTCCTTGGGGTGATTGACAAGGTGCTGCTGGTACAGGATAAAAGTACTCGAGAGACGTACGTTTTGAAAGGTCTCAGGAAAAGTAGCGAGTGCGGCAGGAACAAAAAGACCATCATCCCCCGCTGTGTGCCCAACATGGTTCGTCTGCACAAGTACATCATCTCGGAGGACTCCATTTTCCTGGTGCTGCAGCTTGCTGAAGGTGGTAAATTGTGGTCCTACGTGAGCAAATTCTTGAACAAAACCCCGGAAGAGAGCTTTGACATCCCTTTCATTCAGAAATCACACACGACGCCCATCCACATGGCCGACCGCCTCTTCGTGGAGCTGGATGACGACAGTGGCAGCACGGACTCCGGGGCGCTGCAGGTCCTGCCTCTGAAAAACAGCCCGACTGCCAGCTCCCAGGAAGACAACAGCATACGGGAGGAGGACGGGCAGGAGAGTTCACGCGCGCTGCTGGACTCCAGTGCCTCGTCGGAAGAGGAGTGCACCAACAGTTACCTCACGCTGTGCAACGAGTACGAGCAGGAGAAGGTGGAGCCCGTCACCCTGGCCGACGAGAAGCCTTTGCTGAAGGTGAATGGGGACAGCCTAGACGCTCCTGACGCGGCAGATCTCCTTCCTGCCGCAGCCGATGGCGGCAccactgcctcctcctcctccagaccCCACTCCCTGCTGAGCAACGACAGCCTGTGCTCGCCCATCAGTGCCCAGGAGCTGCGCTTCTTCACGGAAGATGTGGGTGCCGAGGTGTTCAGCCCCTCTAGGAGCAGCGCCGCAGAGTCCCTGGACCAGTCCAAGAAGAGCCCCATGGAGTTCTTCAGGATCGACAGCAAGGACAGTGCCAGCGACCTCTTGGGCCTGGAAGTGGGAGACAAGCTGTCAGGTCCGAAGATCAACCCCCCAAAGATACTGCATGCTGCGCCCGAGCTGGAGACCGGTCCACTGGAGCACAGAGGTGTGACCGACTGCACCACCTTCGACAGCGATGCTGGCTCCAATGAGTCGGTCCCTGTTATTTCGTTCAAGGAAGCGGCAGTGGAGGACGTGGGGAGCGGCCTGGATGAGGGCCCGCCTCCTGACCTCCTGGTGAACCTACCGGGCGTCTCAGAGTCCGCATCAGAAGAGCCGGCTTCAGATGGCTCTCTGCTAGTGGACAAGTCTTATGTCGGGCCTCCGCGGCTCGAGAAGCCTGACGTCCTCCAACTCCACCACCACCTAGGCAAGGATCCCCTCCCCACCACACACTCCCCGGGGCCACACTTCCCCACATCTGGAAGTGCCCTCGCCCACTCCTTGAGTGCCAGATCAGAAGAGAACGTCCTGGAGCGCTTGGGTGCTGCACTGCAGGAGCGCTGCGCACTTTCAATGTGTGAGGAGGCGACAGAAACAGGCCCCGTCAGCTCCgcagctctctctcagggacCCGGCGCCAGTGCGTCTCCTTCACATACGACCAACACAAGCTTGACCGAGCTCTCGTCCCGGGCAGATGTGAGCGCGGTGTGCGAGGTGGGGGGGCGCTTGGAAAGTTGCGACTCAGAGGGAGGTGGCGGCAAAGGGGTTCCACTCTTTGCAGGGGAGAGCCAGGCTGATGGAGGAAGCATAAAGGAGAGTCCGGTTGAGGAAGCGGGGAAAAGGGACAGGGATGTCTCCCAGCTCTTCAAGGAGCTAGATGAACTCTTAGTCCTGGCCTCCCAAGCCCACATCCCTGAGATGTACGTCCAGCGCTGGGCAGTGGAGCTCGTCCTCGCCCTGGAGGCTCTCCACCAAGAAGGAATCGTGTGCCGAGATCTGAACCCCAACAACATCTTATTGAATGATAGAGTACTTAATGATGCCATTATTCTTAATGATACTGTTTTTAGCTACAAAGGAATAATTACAGTTCACTTCTGCTGGAAATGCAAAAAGGGGggaattgttttgatttctcctgtcattttgtttttaggacACATTCAGCTCACATATTTCTGCAGGTGGAGTGAAGTTGAAGACTCCTGCGATACTGAAGCAGTTGCCAGAATGTACTGCGCCCCAGAAAACCCAGAGTGTGCGCCTGCATTTGCAGGAGTAAAGGAGCTCTTAATCTGCCCTTTGTCCTCAGTGCAGATTTGTAAAGTGACCTTTGTACCAAACCCATTCCTCTCGCCCCTGAGCGCTGATTCCATGCCAAGCTTTCCATTTGTGGGCTATTACGGGCGGAATCTTAAAAGTACAATAAGTCCACATTTTCCTAATTTTATTGAAATGGGAGATAGTGAGGCAGGAAAAGGAGGCTATTTCCAATCATCTAAAGAAGCACTCTTGGAATTGGATCTGGTGATGAAAATGACTGCATGTTCTGGGAGCCAGACCAGGGAAGACTTCAGTGGTGTACGAAGCAAGCAGGTTCTCTGCTTCAGTAAGTTGGAGACCAGAACCAGAGCGAGTGATCTTTCCCTCATTAAAATAGTGTGTGGCACTGCGGCTGAAACGGATGCATTAGAGTTTGGCTCTCCCTGTCAGAGGCAGAGCTGCACTACAAGGGAACAGCCAGCAGTTGCATCAGTAATCTTGAGGAATAAGCAACACTTGTGTTCTTGCTGCCTCATTAGTGCCAGGGCAGATGGGGCGGCAGCGGCAGCCTGGGAGCTGCCGTTTGAAACGCAAGATCAGAGCACAGGCCCCTCCCCCGCGGCAAACTTTCAGCTCTTCCCTTATAAAAGTGTGCCGGAGAAGAACCAGAGGAAACGTGTAGGAAAGCACGGACGGGAGCAGGCATTGTAA

Function


GO: NA

KEGG:

id description
K20839 RSKL; ribosomal protein S6 kinase-like

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3619 lncRNA downstream 209797 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 214575 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 329116 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 426791 17041437 ~ 17042549 (-) True G2902
TU3539 lncRNA downstream 471736 16996790 ~ 16997604 (-) True G2903
TU3865 lncRNA upstream 422369 17935840 ~ 17940712 (-) True G3170
TU3907 lncRNA upstream 621908 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 625341 18138812 ~ 18142681 (-) True AMCG00003784
TU3968 lncRNA upstream 896399 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 925630 18439101 ~ 18439510 (-) True G3266
AMCG00003754 mRNA downstream 177390 17275642 ~ 17291950 (-) True AMCG00003754
AMCG00003753 mRNA downstream 240159 17205313 ~ 17229181 (-) True AMCG00003753
AMCG00003751 mRNA downstream 328958 17137248 ~ 17140382 (-) True AMCG00003751
AMCG00003746 mRNA downstream 422315 17043634 ~ 17047025 (-) True AMCG00003746
AMCG00003748 mRNA downstream 455566 16998780 ~ 17013774 (-) True AMCG00003748
AMCG00003758 mRNA upstream 1045 17514516 ~ 17526657 (-) True AMCG00003758
AMCG00003756 mRNA upstream 42486 17555957 ~ 17565405 (-) True AMCG00003756
AMCG00003762 mRNA upstream 64900 17578371 ~ 17599733 (-) True AMCG00003762
AMCG00003766 mRNA upstream 131073 17644544 ~ 17668847 (-) True AMCG00003766
AMCG00003765 mRNA upstream 166975 17680446 ~ 17703226 (-) True AMCG00003765
TU3242 other downstream 1877610 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2658009 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3456319 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4358212 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4433851 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 429106 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 633189 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1911492 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1930545 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1930545 19444016 ~ 19506753 (-) False G3523

Expression Profile