RNA id: AMCG00003766


Basic Information

Item Value
RNA id AMCG00003766
length 2708
RNA type mRNA
GC content 0.60
exon number 19
gene id AMCG00003766
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17644544 ~ 17668847 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCGTTGGTCTAAACTGACAGTGCGAATGTGCGTCGCGGCGTCTGATTGGCTGGGCGCAACGGGCTGACcgtgtgacgtcagcggcagcatTGGGCAGGCGGCCCAGCGAGAGAGACGACAAAGTCCGGTAACATCCTCCGCCGCCGCTCGGAGGAGACGCAGAGTACCGAGCAGTGGCTGCCCCAGCCCGCTGAACTGAGCCCGACAGACGCCGCTCTCCGGCCTCCATGGAGCCGTGCTGACACGTCTTGTGACGCGACGCAAACCATGAACTACGTGGGGCAGCTGGCGGGGCAGGTGCTGGTGCAGGTAAAGGAGCTGTACCGCGGCTTGAACCCCGCCACGCTGTCAGGCTGCATCGACGTCATCGTGGTGCGCCAGCCCGACGGCAGCCTGCAGTGCTCCCCCTTCCACGTGCGATTCGGGAAGATGGGCGTGCTGAGGTCCCGGGAGAAAGTGGTGGACATAGAGATCAACGGGGAATCTGTGAGTCTGCACATGAAGCTCGGAGAAAACGGGGAAGCTTTCTTcgtgaaagagacagagaatgaTAAGGAGGTCGTTCCCTCATACCTGGCCACCTCCCCCATTGTGTCTCAGGGAGCAGCTCTGATGGAGGCGCAGCTGGGGAAGGGGTCAGCCCGAGGGTCAGAGCCGGGCGCTCTGTGCCCCACAGTGGCCTCGGCCCTCCTGGCACATTCCGGGGGGGACAGCCCCCAGGGGAACTGCTCCgtgaagaagaggaggaaacGGAGGCGGAAGTCCAAGTTGGACAGTGTGAAGAGGGAGGACAACGGGGAGGACTCGGAGGACGACGACATGTTCCCCATTGACATGAGTTCGGACGAGGAGCTGGGAACTGAACTGGGTGACCACAGCAGGACCTCGTCATGTGATGATGCAGCTATGGGCAACTGTTCTGGAAGCGCCTTCATGCAGAGCCAGGTGTACGCACGCTCGGACGGAGAGTGGTCACCTGTTCAGAGCCCCAGTGGATCGCGACCTTCGACCCCGAAGAGTGACTCAGAGCTAGTCACCAAAGGCTCTGACAAAGGCAAAAAGAACAACCCAGAGATGCTGTGGGCATGGGGAGAGCTGCCCCAAGCTGCCAAGCGCTCGTTTTCCTCCAAATCAGAGCAGTCGGTGCTGGTGAATATCCCAGTGTCTGAAAGCACTCACTTCAGGGTGATCTCGGGGGACTCTCCCCCGGAGACACGGGACAACAGCACCCCACCTCCCGCCCTGTTCGGCCCTGCGGGGCTGTGTGAGAGCGAGGCTGCGGGGGGGCTGGAGCTGGAGGCCCTGGTGGCCGGAGCTGCTGGTGCCACCTCTCGGCTGCACCTGGAGAGCGAGGATCCGAGCCCCTGCACAGGGCAGCCCCGCGCAGCCAGCAAAACTGACTCGCCCTCCAAAAAGAAAGATAAGAGGAGCCGCCACCTGGGAGCGGATGGCGTTTATCTGGATGACATCACAGAACTAGAGCCTGAAGTGGCCGCTCTGTACTTCCCTAAGAGCGATGGCGGCGGCCCGGGCAGGAGCTGCTCAGAGAGCGGAGCCCGCTCTGCCAACCAGTCTCCACAGTCCGTTGGCAGCTCGGGGATGGACAGCGGAGTGGAGAGCTTCTCTGACCAGCTAGGCGACCTGCCATCCATCACCATTTCCCTGTATTACAACTGGACCACAGCTGCCCCTCTGATGTTAGCAATGCAGGCCTTCCAGAAGCCCCTGCCCAAGGCGACAGTAGAGAACATTATGAAAGAGAAGATGCCGAGGAAAGGAGGGAGGTGGTGGTTCTCCTGGAGGGGCCGCAACAGCAGCGCGAAGCCGGAATCCACATCTGAACAAGGACTTGGTGTGAAAGGAGAGCAGACTGGCAACATGGATTCTGCAGGCAGGATGAAGGATGAGTCTTCGTCCAGCGATGAAGATCATAGGGCCGCCAGGAGCGCTGACTCCACACAGGCCGAGCCCGTCTCACTGTCCTCAGCTGGCGTCTCGTACAAGAAGACTCTCCGGCTCACCTCTGAGCAGCTGATGAGCTTGCAGCTGAAGGACGGGCCCAACGACGTGGTCTTCAGTGTTACCACCCAGTACCAGGGCACCTGTCGCTGTGAGGGCACCATCTACCTGTGGAGCTGGGATGACAAGATAGTCATCTCCGACATCGATGGCACCATCACCAGGTCTGACACGCTGGGCCACATTTTGCCGACGCTTGGTAAAGACTGGACTCACCAGGGGATTGCCCGGCTGTATCACAAAGTCAGCCAGAACGGCTATAAGTTCCTGTACTGCTCGGCTCGTGCCATTGGGATGGCGGACATGACCCGGGGGTACCTGCACTGGGTCAATGAGAGGGGCACCATGCTACCACAGGGTCCCGTGCTGCTCAGTCCCAGCAGCCTGGAAGTCATCGAAAAGAAACCAGAGAAGTTCAAAATCGAGTGTCTGACGGATATAAAGAACCTGTTTTTTCCAAACCCCCAGCCTTTTTACGCTGCTTTTGGAAATAGACCAACAGATGTGTATTCATATAAGGAAGTGGGCGTTCCACTGAACCGAATTTTCACCGTTAACCCAAAAGGAGAACTCCCAGTTCACCTACTGGAGGGAGCAGCTGCCGTCTGTGGAGAGTCCCGACATCCACATCGAGTCCAGCTGAGGCTGGGGCTGAAGGACGCACGGCCGTCTGCTTTTCACACGTCC

Function

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3619 lncRNA downstream 385001 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 389779 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 504320 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 601995 17041437 ~ 17042549 (-) True G2902
TU3539 lncRNA downstream 646940 16996790 ~ 16997604 (-) True G2903
TU3865 lncRNA upstream 266993 17935840 ~ 17940712 (-) True G3170
TU3907 lncRNA upstream 466532 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 469965 18138812 ~ 18142681 (-) True AMCG00003784
TU3968 lncRNA upstream 741023 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 770254 18439101 ~ 18439510 (-) True G3266
AMCG00003762 mRNA downstream 44811 17578371 ~ 17599733 (-) True AMCG00003762
AMCG00003756 mRNA downstream 79139 17555957 ~ 17565405 (-) True AMCG00003756
AMCG00003758 mRNA downstream 117887 17514516 ~ 17526657 (-) True AMCG00003758
AMCG00003757 mRNA downstream 131073 17469340 ~ 17513471 (-) True AMCG00003757
AMCG00003754 mRNA downstream 352594 17275642 ~ 17291950 (-) True AMCG00003754
AMCG00003765 mRNA upstream 11599 17680446 ~ 17703226 (-) True AMCG00003765
AMCG00003764 mRNA upstream 110632 17779479 ~ 17784590 (-) True AMCG00003764
AMCG00003768 mRNA upstream 121092 17789939 ~ 17791057 (-) True AMCG00003768
AMCG00003770 mRNA upstream 206300 17875147 ~ 17876586 (-) True AMCG00003770
AMCG00003776 mRNA upstream 221136 17889983 ~ 17896915 (-) True AMCG00003776
TU3242 other downstream 2052814 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 2833213 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3631523 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4533416 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4609055 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 273730 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 477813 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1756116 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1775169 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1775169 19444016 ~ 19506753 (-) False G3523

Expression Profile