RNA id: AMCG00003771


Basic Information

Item Value
RNA id AMCG00003771
length 3800
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00003771
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17954298 ~ 17970590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTGGCAATCATCACAAAACACAACCCTTTAATTAATGTTTGACTTTATtatcaaagtgtgtgtgtgctagtgtcttgacatttatttgtttacccTGTCAATATTCATAACAACCATCCCTGCAGCGTTCTGtccatatttaatattcatagtGAGCGCGTAGCCCCACCGAGGCCAGCTGAGCTGCGATTCAGGACGCCTGCCAGTCAATTTGTTGTGTTCTGTACTATGGAGCAATTCAAGTCATAAAACATGATAAAAGAGACTGAAATAGCTTAAAGGACAGCAGTTGAGATTCCCTGTAAAGGCGAGGAAGGACACATAAAATGTGTGGATTTATGGATTATGGGAAAAATTTAAACAGGGGGCATCTGGTTGCACAGTGAGTTAATATACGtttatatatagtatgtgtGTGAATTGTAAGTAAATATACAAGGACacgtatataaaaaaagattggGTCAGAGGTTGACAGGCAGGAGATAAGGCTTCCCAGGATCCACTGCTGAAGTCACAGCTCAAAAACCATCCCCTTGGCATCACACGCCAGCCCCTCCCACCTGCCCACTTCATTACAGACTTCAAaactaaactgaattaaaactgatcttgcttgtttatttatttaatagaagtTTGATTCTCGCATTGCATTGCCTTTCCTGAAAATTTCACAATGGAGAGTTTAAATTATGAGCAGGTAATCCATTGCAGTTTAACAGCTTGCCATTTTTTCCcaatatatatcatttttttaattagagatACAAATAAGTGTAGGAATGCTTataagatttgttttcagtttttgtgaGAATATTACTTTCAGAAATTCAGcacaattttgcatttaaatgaagttGTGTTCAAATTAAGGTTACATTGTGGTCTGTGTTTAGAGAGCCCAGTAAGCTGAGGCTATAGTTGAGGCTGGGGTTGCACAACAGTGAAGTTTATAGCTCAGATTAGAGTGTCACAGTGTTTCTGCTCAGGCCATGTCCACCTCTCCACTCTCCTGGGGCTCCTTGATGTGTCTGGAGAACGTCCTGTCACCAAGTCCTGACTCCTTTTGTGTGCATGGAGGTGCAGCTGCGGGACCTGAGGCTACAGCTGGAGAGACAGGGTCTGCTGAACAAGGACCTACAGATCCAGAAGGCGGAGCTGGAGAAGCGgctgcaggagagggagcagctGGTGCAGGATCTGCAGAGTCGTGTGGAGCAGCTGGGTATGAGCGTCAACAGGAGCGCCCCAAGCAGGCAGATCCTGAAGGCGATTGCTTTGAATGACTTCCTGAGCCggctggaggaggagcaggtGTCCATGATGGTGGAGTGTCTGTGTGCTGAGCAGTGCAGTCAGGGCGAGGCTGTCATCCTGGAGGGGCAGGAGGGCAACGCCATGTACATCGTAGCAGATGGAGAGTTGGAAGTGTCCCAGGCTGGGCGCTACTTGCGAACTCTGACCCCCGGGGATGTCTTCGGAGAGCTGGCCATCCTGTACAACTGCAAACGCACCGCCACTACCTACCGCACCATCATGACCAACAAGTCCAAGCACAAGCGGGAGCAGACCCTGAAGGACCTCAGTGACACTCAGCTCTCAAAAATCATCGACTCCATGGAGGAGTGTAAGTTCCAGGATAACGAGGTAATTGTGCGCGAGGGAGCAGAGGGCAACACGTTCTACATCATCCTGAAAGGAGAGgtacAGGTGACTAAGAAGGTGAACGGGCAGGAGAAGGCTCTGCGGCTCATGGGGAAGGGGGAGCACTTTGGGGAGCTGGCCCTGATGCGTGAAATCCTGCGAACGGCAACGTGCACCGCAGTGGGACCGGTCACTTGCATCTCCATCGACAAGGAGGTTTTTGAAGAAACTATTCCATTTGAAAATCTGGAACTGCCTGATGACTCGGAGGTCTTTGAAATCCCAGTGGTgccagagagaaagagGCTGAGCACTACACTGCGACTACAGGACCTTGTACCCGTGCTGTACCAAGAAGGGCGCTTCCATGGAGACCCGGTTACTCTAGGCTTGGGGGGGTTCGGACGCGTGGAGCTGGTGACAAATCTCGAGCACGGCCAGTATTTCGCCCTAAAGCGAGTCAGCAAGAGACACATTGTGGCCAAGAAACAGGAGGAGCACATCAAACTGGAGAAGCGCCTCTTGCAGGAGATCCAGAGCAACTTCATTGTGAGACTCCATGCTGCCTTCAAGGACACCAGGTACATCTACATGCTCCTGGAGTTCTGCTGTGGCGGGGAGCTCTGGACCAAACTCAGAGAAATCGGGCGCTTCGAGGAGCCCATCGCGGTTTTTTGTGCAGCCTGTGTGGTGGAGGCCTTCGCTTATCTCCACAAGAAGGGGATTGTGTATCGGGACCTGAAGCCGGAGAATCTGATGCTGGACAAACACGGCTATGTGAAGCTGGTGGACTTTGGGTTTGCAAAGGTGCTGTCCCGAGGGCAGAAGACGTACTCCTTCTGCGGCACTCCTGAGTACCTGGCCCCTGAGATCCTTCAGAATGAGGGCCATGACTTTGCAGCTGATTTCTGGTCCCTGGGGATCCTGGTCTATGAGCTGCTAACGGGCAGTCCCCCCTTTAGCAGCTCAGACCCCCAGAGGATCTACAGTAAGATTCTGGATGGGGTCCTGAAATTCCCCCACTTCCTGAGTGAGGGCGCCCGCTCTCTGGTCAGCAAGCTGTGCAGGCAGCGCCCGGGTCAAAGGTTAGGAAACACCAAGAACGGGATCAAGGATGTGCGGAACCACAGGTGGTTTGGCAGCATCAACTGGCTGAAGCTGAGGGCCGGGCAGCTGGAAGCGCCCACCATGTGTCTCATCCGCAAGGGTCCCTCGTACATAAACTTTGACCGGTTCCCTCCAGACACAACGCTGGAGGATGAGGACCTATCCGGCTGGGATGATGATTTCTGAGCTCTCAGTGTCTTGAGCACCTCGCCCACGAATGGCTGTTTCCTACAACTGTTAGACACGTTGGCGAAGATTTAAAGAGACACGGAGGAGGACAAACATTCCAGGACACTGAGGGCACAGAGGGACTGTACAGGCCAGCAGCTGACAATCAGATTATCAGAGGACTGGGCTGGGCAGGCACTTTTCACTCTCCTGATGTTCTCGGTCTCTAAAGACGCACTGAGTGTTGATCTTGCCTTGTCACAGAGGACAAGCGCTCACAAGCCCACACCATCGACCGTGAGACACACAGCTGCTGTGAACATGTAACAGTAAATTCTCAAGAACAGTCCACCTGACACCGACCCGTCCACACAACACAAACCCATCCATTCGACACTGACCCGTAATAActcaaaaatggaaaaaacatctgGAATTATCAGATTCTGTCTGCAGAAGAAAAAGTCAGGATGTATCCAGATTGTGTCTGTTGCCACCAATGattcaattaattgattttagaTAACTCAGACTtacagcacagtactgtagctGACAAAACGTGATGGAAATTGTATGAGACTCAGCTGCTCGTGTAAGAGAGTTGTGCAGTGCCTTTTACAACTTGTTGAAACTTGGTGTGAGAGAAACACTTCCAGAAACACTGGAATGCACAGTAATAAAGTAAAGATTGTTAAATAAGGGTGTACTGCTATACATTTACAGCATGAATTTTTCTGCATTGACAGACATGGCAATTCAAGTTCTTTACAAGGAGCACACCTTGGCTGTGTGGCACTTCAGAAACAGGGCTGCTGGCGCTGCTATAAAGCAACTGTGAATTCTGCAGCACAGAAATAAGTTCCCACTGG

Function

GO: NA

KEGG:

id description
K07376 PRKG1; cGMP-dependent protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 697848 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 744257 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 911734 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1020278 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1354969 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 468216 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 574394 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 974992 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 979164 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 980662 18951252 ~ 18971124 (+) True G3375
AMCG00003775 mRNA upstream 4159 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003774 mRNA upstream 15400 17933862 ~ 17938898 (+) True AMCG00003774
AMCG00003772 mRNA upstream 38235 17899908 ~ 17916063 (+) True AMCG00003772
AMCG00003773 mRNA upstream 65455 17881204 ~ 17888843 (+) True AMCG00003773
AMCG00003769 mRNA upstream 156830 17796461 ~ 17797468 (+) True AMCG00003769
AMCG00003779 mRNA downstream 161329 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003786 mRNA downstream 223693 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003787 mRNA downstream 231847 18202437 ~ 18208797 (+) True AMCG00003787
AMCG00003785 mRNA downstream 305868 18276458 ~ 18279829 (+) True AMCG00003785
AMCG00003790 mRNA downstream 318310 18288900 ~ 18320263 (+) True AMCG00003790
TU3719 other upstream 270310 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 1914658 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3534566 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4797671 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 4911701 13037437 ~ 13042597 (+) True AMCG00003648
TU3792 other downstream 167165 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 176070 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 1397603 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3578611 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3775260 21745850 ~ 21760630 (+) True G3771

Expression Profile