RNA id: AMCG00003772


Basic Information

Item Value
RNA id AMCG00003772
length 2684
RNA type mRNA
GC content 0.56
exon number 20
gene id AMCG00003772
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17899908 ~ 17916063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACTTCCGGGTGCGCCGCCGGAATCCCTCCGACTGGAAAGCGTGTTTGGCTTTTACAACGTGGGCCAGCGCTGGAGGACGGGCGAGATTGCGCTGAACATTTCCCAAGTTTACGTCTATTATTATGAATGAGCTGCTTTACTGAGGGGCTTCAGGATGCAGATTTCCAGTGTTAACGACGTGAAGATTTATAATTTGAGCTACGGAAAATCATTGCCGGAGTGGCTCTCAGACAGGAAGAAACGGGCTTTACAGAAGAAAGATGTCGACATCCGACGCAGGATCGAGCTCATCCAGGACTTCGAGATGCCCACGGTCAGCACGTCCATCAAGGTGTCCCGTGATGGGCAGTATGTGCTGGCAGCTGgCACCTACAAGCCTCGGATTCGATGCTACGACACGTATCAGTTGTCTCTGAAGTTCGAAAGATGCCTGGACTCCGATGttgTGGCCTTTGATGTTCTGTCAGATGACTACTCCAAGCTGGTCTTCCTGCACTGTGACCGGTATGTGGAGTTTCATTCGCAAAATGGCTATTATTACAAGACCAGGATCCCCAAGTTTGGCAGAGCCTTCTCCTACCACTACCCCTCGTGTGACCTGTACTTTGTGGGAGCCAGCTCAGAGGTGTTCAGACTGAACTTGGAACAAGGAAGATTTCTAAACTCCTTACAGACGGATGCTGCGGAGAACAATGTGTGTGATATCAACCCTGTGCACCACCTGTTTGCCGCCGGATCAGCTGAGGGGAAGGTCGAATGCTGGGACCCGAGGGCCAGGAAACGTGCTGGCATCCTGGACTGCGCTTTGAGCAGCGTCACCGAGAACACAGAGGTGGAAGGCCTGCCCTCTGTGTCCTGCTTGAAGTTCAGAGGGGCTCTGCACATGGCCGTGGGGACGAGCACTGGACAGGGGAAGGTCTTCTCCTCCATAGAGCCAGAGCACAACATCAACGACGTCTGCCTGTATCCCAGCTCTGgAATGCTTTTTACAGCCAATGAAGATCCCAAAATGAATACCTACTACATTCCtGCTCTGGGTCCAGCCCCTCGCTGGTGCTCCTTCCTGGACAGCCTGacggaggagctggaggagaacCCGGAGAGCACGGTCTATGACGACTACAAGTTCGTCACCCGGAAGGACCTGGAGAACCTGGGCCTCGTGCACCTGATTGGCTCCCCACTACTGCGAGCCTACATGCATGGCTTCTTCATGGATATCCGGCTCTATCATAAGGTGAAGACCATGGCCAACCCATTCGCTTACGAAGAGTACCGCAAGGATAAGATCCGCCAGAAGATCGAGGAGACGAGGACTCAGAGAGTGCAGATCAAGAAATTGCCCAAGGTCAACAAGGAGCTGGCGCTGAAGCTGATggaagaagatgaagatgcTAAGcagctgaagaagaagaagggaaagAACACTCCCAACATCCTCAGCGACGATCGATTCAAGGTGATGTTCCAGAACCCAGACTACCAGGTGGACGAGATGAGCGAGGAGTTCCGGCTGCTCAACCCCATCGTGTCAAAGGTCACgcagaagaggaagaagaagctGCGCTTGCTGGAGAAGCAGGAAGCGGCTCAGCAGgaggatgaggaggagccTGAGGGCAAACCCAGCGACGAGGAGAGCTCCGAGAGCTCCGACGACGACAAGAGCTGGgtggaggaggtgagggagcaGCGCAAGCAGCTGTACCTGGAGGAGAAGGCGCGTCGACGGGAGCGCCGGCTGCAGGACCGGCACACCGAGCTGGAGCCGCGCTTCTTCGAGATCAAGGCCGGCGAGGAGTTCCGCAGCTTCAAGGACGCGTCCCGGAAACAGAAGCTGCAGAAggtcACACTTGAGGACCGTCTGAAGCTGGAGGAGAGCTCTGGAGCCATGGCTGTGTCTGATAACACCGTGGGCAGTAAGCAGGTCACTTTCACACTGAAGAAGTcggagcagcagcagcggcagcaggAGCTGGAGCGGCAGCACCACCAGGAGAGGAAGAACCTGCGGCGGGCCGCCGGGCATCTCCGCACTGGCCCCCCCCGTGGTGGGGGGCGGGGAAGGGGGCGGGGCGGCATGCGAGGCAGGGGCCGTGGCCGGGGACACTTCTGAGGAGTAGTGTCCTACCACTGCACGGCTCCACAGCTGACCTGGCCAGACCCTTCCTGGCGAGACTGCCCAGTTACTGTGCAAAAACCTTAGCGGCTGAGTAGCTTCAGTGTCTGGGCTCGTTGTGTGCGTTTAGTGTTGttcttatgatgatgatgattaaagCTGCATGGGTTGGGTACAGGTGCCCATGGTTGTAGGGAAACGCGCAGGCCTCCACTCCTCCCCAGCAGGTAATACGGATCCTGCGGTGTGGAGGTACTGTGTGCATCGACCCCGAGCTCAATCTCCAGGAGCACGAACTTCACTCCTCTTCACGTCAGCCGTGTAATGCAGCTGTGCTTCAGGGCTCTGGTCATGAACTCTGACCTCTGTGCGAGAGCTGCCACTGGCTGCCCCAGCCACTGTGCCAGCAGACCTTGATGTTATCGCtcctctggttttgttttgaatgggaAGTGTTCCCTTGTACAGACAAAACAACTGTATTCCCGATTCAAAGCTTTAGAAAGTAGGACCATCCTTCCTACTGAAGCactaaatcaattacatttttaaaacactttac

Function

GO: NA

KEGG:

id description
K14788 NOL10, ENP2; ribosome biogenesis protein ENP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 643458 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 689867 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 857344 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 965888 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1300579 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 522743 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 628921 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1029519 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 1033691 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 1035189 18951252 ~ 18971124 (+) True G3375
AMCG00003773 mRNA upstream 11065 17881204 ~ 17888843 (+) True AMCG00003773
AMCG00003769 mRNA upstream 102440 17796461 ~ 17797468 (+) True AMCG00003769
AMCG00003767 mRNA upstream 110939 17787268 ~ 17788969 (+) True AMCG00003767
AMCG00003763 mRNA upstream 121461 17738242 ~ 17778447 (+) True AMCG00003763
AMCG00003761 mRNA upstream 259017 17629286 ~ 17640891 (+) True AMCG00003761
AMCG00003774 mRNA downstream 17799 17933862 ~ 17938898 (+) True AMCG00003774
AMCG00003775 mRNA downstream 26524 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003771 mRNA downstream 38235 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003779 mRNA downstream 215856 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003786 mRNA downstream 278220 18194283 ~ 18199528 (+) True AMCG00003786
TU3719 other upstream 215920 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 1860268 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3480176 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4743281 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 4857311 13037437 ~ 13042597 (+) True AMCG00003648
TU3792 other downstream 221692 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 230597 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 1452130 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3633138 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3829787 21745850 ~ 21760630 (+) True G3771

Expression Profile