RNA id: AMCG00003774


Basic Information

Item Value
RNA id AMCG00003774
length 1865
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00003774
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17933862 ~ 17938898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGGTTCCAGCTGGTGTGTTGTCACGGAAACCAGCAGGATATAAATACCCCGGGCTGCGGCGCCGGCTGCGTATTCACTTCAGTCAGTCGCATAGAGAGGCTAGAGGGGACGGGGGTGCaggtttatttcatttcaagaatTCTGGTCTAATGGACAAAATCTTCGTAAATGCTTTTTAAGAATACTCGCTTCAGTAAAGCACATAACGGCTTCTTGGAAGGCCCGGATTTTGCCTTTTATCTGAAAGTGTTCAATTTCAAGGGCGAACCTCCTTGGCTGTAAAGCTGATCGCAGCTCTGTGACGATCCCATCTCTTTCTTATTCATTTTTACATAGCTTCTCCAGTGACTTGATTAAATCAagcattaaagaaaatgaacagctACAGCCCTGCCGAGTTCGACCTCACTTTCCTGGATGAGGGCTTCAGTGCCAGAGACATCGTGGAGCAGAAGATTAATGAGGTGTCCACATCGGATGACAAGGATGCCTTTTATGTGGCAGACCTGGGGGACATCTTGAAGAAGCACCTGCGCTGGGCCCGAGCCCTGCCACGCATCACCCCCTTCTACGCCGTCAAGTGCAATGACAGCAAGACCGTCGTCCGCACCCTCGCCACCCTGGGAGCCGGCTTCGACTGTGCCAGCAAGTTAGTGGAGTTGGTTTTGAAAGATGAGCAGTTTGCTCCAGTGACTGATCCCAGTAAAGGGGATCCTCCAGTAAACATCACTGACGACTTCACTTTCTCCCCACAGAATGAGATTCAGCTGGTGCAGAGCATTGGCGTCGCCCCAGAACGCATCATCTATGCCAACCCCTGCAAACAGGTGTCCCAGATCAAATATGCAGCGGCCCACGGTGTCCAGAAAATGACCTTTGACAGCGAGGTGGAACTGATGAAAGTGGCACGCAGCCATAGCAATGCAAAGCTCGTTCTCCGGATTGCAACCGATGACTCCAAAGCCGTGTGCCGTCTGAGTGTGAAGTTTGGAGCGACGCTGAAGTCTTCCCGGTTGCTGCTGGAGAGGGCGAAGGAGCTGGGGGTGGACATCATTGGTGTGAGCTTCCATGTTGGGAGTGGCTGCACTGACCCTGAGACGTACTCCCAGGCCATTTCTGATGCTCGCTGTGTCTTTGATATGGGGGAGGAACTCGGGTTCAACATGACACTCCTGGACATCGGTGGGGGGTTCCCCGGGTCAGAGGATGTGAAGCTGAAGTTTGAAGAGATCACTGCTGTGATCAACCTTGCCCTGGACAAGTACTTCCCAGTGGACTCTGGCGTGCAGGTGATCGCAGAGCCGGGGCGCTACTATGTGGCGTCGGCCTACACCCTGGCGGTCAACATAATTGCTAAGAAGGTGGTGATGAAGGAACAGTCTGCCTCTGATGATGAAGACGATGGCACAAATGACAGGACCCTGATGTATTACGTCAACGATGGAGTTTATGGCTCCTTCAACTGCATCCTTTATGACCATGCTCATGTCCTGCCCATGCTGCACAAGAAACCCAAGCCAGATGAGAAGTTCTACTCCTGCAGCATCTGGGGCCCGACCTGCGATGGCCTGGACCGCATTGTGGAGCTGTGTGACATGCCAGAGCTGCAGGTTGGGGACTGGATGCTGTTTGAGAACATGGGTGCCTACACTGTGGCAGCTTCTTCCACCTTCAATGGCTTCCAGAAACCAGACATCCACTATGTGATGTCCAGGCCTGCATGGCAACTGATGCAGCAGGTCCGGGAGCAGGGCTTGACTCTGCCTTTGGGGGAGCTGTGCCCCAGCACTCTGCCCTCCTGCTGTGCCTGGGAGAGTGGGGTGGAGCTGCCTGCGTCCTCCTGCTCCACTCGCGTGCTCTAA

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 677412 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 723821 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 891298 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 999842 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1334533 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 499908 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 606086 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 1006684 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 1010856 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 1012354 18951252 ~ 18971124 (+) True G3375
AMCG00003772 mRNA upstream 17799 17899908 ~ 17916063 (+) True AMCG00003772
AMCG00003773 mRNA upstream 45019 17881204 ~ 17888843 (+) True AMCG00003773
AMCG00003769 mRNA upstream 136394 17796461 ~ 17797468 (+) True AMCG00003769
AMCG00003767 mRNA upstream 144893 17787268 ~ 17788969 (+) True AMCG00003767
AMCG00003763 mRNA upstream 155415 17738242 ~ 17778447 (+) True AMCG00003763
AMCG00003775 mRNA downstream 3689 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003771 mRNA downstream 15400 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003779 mRNA downstream 193021 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003786 mRNA downstream 255385 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003787 mRNA downstream 263539 18202437 ~ 18208797 (+) True AMCG00003787
TU3719 other upstream 249874 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 1894222 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3514130 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 4777235 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 4891265 13037437 ~ 13042597 (+) True AMCG00003648
TU3792 other downstream 198857 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 207762 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 1429295 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3610303 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3806952 21745850 ~ 21760630 (+) True G3771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023322 False 1434 mRNA 0.56 9 NC_007128.7 51746830 ~ 51757134 (+)