RNA id: AMCG00003776


Basic Information

Item Value
RNA id AMCG00003776
length 987
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00003776
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17889983 ~ 17896915 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCGTGAGAGTTTCCTAGCAGTGAAGACCATAGACGTGGAGCAAATGGCGCAGTACTGGTTAATATCTGCTCCCATTGACAATACCAGTGAAGAGAATCTGGAGAAAATGCTACACGAGACGACTAAAGCCAACATGTCTAGTAATTTCAAATTCCCAATACCTGATCTGCAGGTAGGGACCTTGGATCTCCTCGTCAAGCTCTCAGATGAGCTGGGGCAACTGGACTCCCATGTTGAGAGCGTACTGAAGAAGACGTCCCAGTGCATGTGTCAGGTTATGGAAGACTCTAATGAAAAGTTTCAGGAAAACCTGCTGGCCAATGGCGTCGATCTGGTGACGTACCTCACTAACTTTCAATGGGACATGGCCAAAGGGAACCTTTTAACGCGAACACTGACCGACATCGTCAAGAAGGACGATTTTGTGCTCGACTCAGAATACTTGACCACTCTGCTTGTGGTTGTGCCCAGGAAAATCACAGAGGACTCAGACGGAGGGCTCTTCACTGTCACACTGTTCAAAAAGGTGGTTGCTGACTTCCGAGTGAAGGCCAGGGAAAACAAGTTTATAGTACGTGAATTCAGCTACGATGAGGCAGAACTGGAGGCAGAGAAGGAAGAGATCACACGTTTCACCACGGAGCAGAAGCAGCAATACGGCCCCCTCCTGCGATGGCTGAAGGTTAATTTCAGCGAGGTGTTTGTTGCCTGGATCCACATGAAGGGTCTTCGGGTGTTTGTGGAATCTGTGTTGAGGTATGGCCTCCCAGTCAACTTCCAGGCGGTTCTGCTGCAACCCAACGAGAAGAAAATCAAGCAGCTCAGAGAGGTCCTAGCATCGCACTTCAGTTACCTGGATGGGAGAGGTGGCGGCAAACTGGACGTCAGAGGAGTTGACATCCCTGGGATGATTTTAGTGAATCAGGAATACCATTCCTACGTCTACTTCAAGATTGATGCGGATGTGGCCAATGGCATCTAG

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG:

id description
K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3619 lncRNA downstream 630440 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 635218 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 749759 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 847434 17041437 ~ 17042549 (-) True G2902
TU3539 lncRNA downstream 892379 16996790 ~ 16997604 (-) True G2903
TU3865 lncRNA upstream 38925 17935840 ~ 17940712 (-) True G3170
TU3907 lncRNA upstream 238464 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 241897 18138812 ~ 18142681 (-) True AMCG00003784
TU3968 lncRNA upstream 512955 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 542186 18439101 ~ 18439510 (-) True G3266
AMCG00003770 mRNA downstream 13397 17875147 ~ 17876586 (-) True AMCG00003770
AMCG00003768 mRNA downstream 98926 17789939 ~ 17791057 (-) True AMCG00003768
AMCG00003764 mRNA downstream 105393 17779479 ~ 17784590 (-) True AMCG00003764
AMCG00003765 mRNA downstream 186757 17680446 ~ 17703226 (-) True AMCG00003765
AMCG00003766 mRNA downstream 221136 17644544 ~ 17668847 (-) True AMCG00003766
AMCG00003777 mRNA upstream 73897 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003778 mRNA upstream 107256 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003780 mRNA upstream 208173 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003784 mRNA upstream 239618 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003782 mRNA upstream 250286 18147201 ~ 18148709 (-) False AMCG00003782
TU3242 other downstream 2298253 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3078652 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 3876962 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4778855 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 4854494 13034953 ~ 13035489 (-) True G2236
TU3879 other upstream 45662 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 249745 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1528048 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1547101 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1547101 19444016 ~ 19506753 (-) False G3523

Expression Profile