RNA id: AMCG00003780


Basic Information

Item Value
RNA id AMCG00003780
length 8871
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00003780
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18105088 ~ 18124295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTGGGCAGTGGAGGAATGGAAAGATGGGCTACCTGGTAAAGCCCTTCAGAAAATCCAGGAGATTGAGGGCCAACTGGACAAGCTGAAGAAGGAACggcaacagaaacaattccAGCTCGAGTCCCTGGAGGCTGCCTTCCAGAAGCAAAAACagaagGTGGAGATGGAGAAGAACGAGGCGGTGGTGCTGAAGCGAGAGAACCAGTCTCTGGTGGAGTCGTGCGACAGCCTGGAGAAGCTCAGGCAGAAGGTTTCCCACGAGTTGCAGATCAAAGAGCAGCAGGTGAACTACCTGGAGGGGCAGCTCACCTCCAGCAAGAAGCAGGTGGAGAAGCTGGAGCAAGACATTAAGAGGTACAAGTCTGAGCTGGACAGAAGCAAGCAGGCTCACGCAGGAGAGGTGCAGCTGTACGGGACGCCTCAGAAGAGCTTCACTGCTCCTGCCACTCCCAGCCAGAGGACCCATGAAGTTGAGGAGAGGCAGAGACTGGAAACAGAGCTGAAGGTCATACAAGTCAAACTACTGAACCAGTCCTCCGTGAGTCACAAGGAAATCGCCCGGCATCAGACACAGTCCTCAATATTTCCATGGCAGCAGGACCAGACACCAAGCCGCCAGTCAAACAGCTTCCTGGATACGCCTCTGAAAAGGGGGAGTGGAGCCTCCAACTTCCTGTGGGAAAAGGAAGGGACCCCCTATAAACGTGATTCCAGAAGCACTTTGCACGACAGTGTGGGGAACACTGAGCAGAACGAGCAGCTCAAGGCCATGAACCAAGATCTGAAAGCCAGAGTCTCTGAGCTGGAGCTTCGTCTTCAGGCCCAGGAGAAGGACATGAAGAGCCAGCTTCTCAAGATGCAGGAAATGCAGAGCCACTTTGAGAAAGCCAAGCTGGAGCTGGCAGACAAAGACCGACACCTGAGCAAATGCAGAGACGAGCTGACCAAGGTGACGGGCCAGTACGACCAGACCACTGCCAAGgAACTCTCACATCAGCAGAATTCCCAGCATGCTCTGGATCAGCAGTTTAATCAGATGAAAACTAAACTGGGACAGGAAGTGCAGCTGGCCAAGAAGGAGTACAATGTTTTACAGTCTGAAATAGACAAGGTAAAGGCACAGAAACACAGTCTGGAGAAAGACATGGAGGAGCTGAAGCAGAAACTGAGTAGGACTGATCAGATTCTGCAGGCCAGTCAGACCAAGGAGAATGACGCAAGAAAAGGCTTTGAGGAAATGCAGAAAGAGAAAAGCCGTCTGAGCTGTCAGCTGGAGCAGAGTTCAAGGAGACTGTCTCAAGTGGAAGAGGAGCTCAACACTGCCAGACAGAATCTGAAGCACAGCCACAACCTGGTGGAGGATCTGAAAGCTAAATATCAGGCACAGAATGAAGAGCTGAAAAGTCTTCGAGTAAAACTGGAAACACAAGACAGATCTTCGGCGCTGGATGTGgtaaacatgaaaataagagTCTCTGAACTGGAAAAGATCAAGGAGGTGACTCAGAGCCAAATGAAGAAACAGGAGGCAGAGCTGGAGCAGCTGAGGAATGAGCGAGCTGCActggagagagagcagcaggacCTGCGTACAGCCTTGTCTTCGCAGCAGAGCGAGTGCAGCGCGCTGAAGGAGCAGAATGAGTCTCTGTCCAAATGGAAAGATGAGAAGGAGAACGTGATCAACAACATCGACACTGAGAGAGGGAGCATGCTACGCCAGatcacagagctgcagcagagCACCCAGGAGCTGCAGACCGTCAATGGTGGCCTACAAGAGAGGATGAGGATCCTGGATGGGGAGAAAGAGACTCTGGCTGGGCAGATTGATGTTCTGAAAGGTGAGCTTCTCAATAAGTGCACTACACTGGAGGAAAAGAGCCATGTGTACGAGGAACTTCAGAAGAGCTCCCAGAATGCAGAGCAAAAATACAGGAAGGATTTGGAGAATGCCTTGTTACAGCTCGCTCACCTGCAGGCACAGGTGGCAGACCTGGCCACCAAACTGCAGCAAGAGAGCAGCAGAGCTGAGGCCCTGGAGAAGTCCCGCAGTGAGCTCTTGACCGAGTACGAAAGTGCATGTAGCCTTGCAAAGTCAAAAGACTCAGTCCTCGAGTTGAAGGATAGTGAGATCTTCCAGCTGCAGAGCACCCTGGAGCAGACCAGGTCTCAGCATGAGCAGCTACTCGCCAGGGTCACTGAGGAAAAGAGTGCTTTAACTAAGGAGCACCAGGAAAGTCTCCTTGAAAAGGCAGAAGCTGTAGGGCAGGCGAGGCTGGACTGGGAGAAGAGTCAGCAGGAGGTATCTTTCTTAACTGAACAGGTGTCTTCGCTGGAATCTTCCTTAAAACTGCAAAAGGCTCTCAGTGCGGAGCTGCAGAGCAAATCCGAGGAGCTTTCAAAAGTCAAAGACGACCTGGAGGTGAAACTATCAGAGTCAGAGAGACGTGGAGAAGAAATTGCTCAAGGAATGAGTCTCCTGTCTGAGCAAGCCAAGTCTGCAATTTCCCTTCAGGAGCAGTGTCGGCTCTTATCAGAAACAGCACAGGAGAAGGATGAAGCTCTGCAAAATCTGAGAAAGGAACTTGACAGCAAAGTAAATGAGCTCCAGCTCCTCAGCACATCGATTGAGGAAGGAAAGGTTAAGGTTTtggatttggaaaataaaaactcacaGCTGAGAGAGAAACTGCAAGCCCTGGAGAAGGACATCGAACAGGTTTCTGCAAAGAATCACAGTCTGGACGAGGCTCACAATGCCTTGTGCCAGGAGAAGAATGACTTGATGAAGGAGCTCTCCAGGCTCTCCGATTTATTAGCTGAAAAAGAAGCCTACACAGAGGTACTGAGTGGGTACAAAGAGCAGCATGAGGCTGCAAATCGTTTATGTGCTGAGCTTCAGTGTTCATTAGAGGATCTGCAGGGGAAATACACTTCTGCTCTACAGAACACCACCATCTTGGAAAGTCGTTTGAGTGATGAATCAAGCAGAGTTTTGTTCCTACAGAAGGACTTGGAGGAACTGATGGAGAGATCTACAAAGGACTGCGAAGAACACGCTTCCAAAGTGAAGCTCTACGAAGAAGAACGAGATGGCATAAATCGGCACTTGGAGGTTCAGCGCCAGAAGCAATCCTCTGAGGCTGCAGATGCCAAGGAGAAACTGGACAAAGTGGAAGCTGAAATATCCCAGTTGAAAGAGTATCTGGTGACTGGAAAGGAGGAGCTTGCAAAAATGGAGGACTTGTGCAGATTAACAAGCCAGGAGAAGCTCTGTTTGGAACGGCAGGTCTCCGAGCTCCAGGCTGAGATGCAGTGTTTGAAAGATGCTCTGTTGGTATCCCAGAGCTGTGCTGAAGAAAGGAGCCGACAGCTGCAGCTGTTCGAGAGTCGGCTGTGCATTGCGGAGCATGGACAGGCACAGGCCGTGGACGCCCTGAAAGAAAAGCAGCTCAGCCTGAACAAGGTCAACGTCCAGCTGGAGATGCTTCAGATGGACCTGGAGGATAAGGAGGTGTGTCTGAACTCCTATGATTCACAGGTGGAGCAGCTTCAGGACTCTGTGGTTGAGCACGAGAAGAAACTGGAAGAGAGTCAGCTGCAGGTGGCTTCCCTGCAGAGGGAACTGCTTTCCGTCCGGCAGGAACTCGCAGACAAGCAGCTTGAGATTACCCAAAACAAGCAGTCTGCAGGCCCTGCTCAGGAGCGTGAGCAACCAGTGGATGAGAAGTGTGCAGCTCTGGCAGACACAGCCAAGTCATTCCAATCTGAGAATGAGAAACTGCAGTCTCTCCTGGATGAGGAAGTTATAAAGCACAGAGATCTTCAAAAGATATATGACTGCCTGGTGTTGGAGAAATCTGAACTGGAAACCAACCTGATTCAGTCAGAAAGCCAGTGCTTGAGTGCTCTGGAGGAGATGAACAGCTTAAAGGAGAAATTTCTTGATTTACAGGAATCACTGTGTGGCTTACAGGAAGAGAACCAGTCTTTGAGAGACACTCTTGACCAGCAAGATGCTAGAAATGAATCGCAAAGCAGTAGTAGTGCTAACTCTTCTGAAGTACAGCACACCCAGAATGAAGAACTTGCGGCCCAGCAGACTGAGCTCATTCAGAAGGTGGCTTTTCTGCAGAATGAGTACGAAGCCTCTAAGGAGCAGTGCGGCACTTTGCTGTTGACAGTCTCTGAGCAGCAGAGCCTTATCGAGCAGCTCCAGGCCCAGACAGCTCTGTGGGTGCAGGGGGAGGTTGAGCAGCTTTCTGGGCAGAAATCAACTGAGAGTTCATTCGTTAACATCAGTCTGCACGAAGATCTGAAATCCACAGCGGAGGGCACAGTCCTGGAAGCGTCCCACAGCAGCGCTATCGTCCTGAAGCAGGGTACAGAATTGACTGCAACGCACTGCTCAACTGATGCGATGGAGCCTGCATTTTCCCCAGTGCATGGGGAGAGAGATGTTTTTCAGGAGGAATTCGGCGGCCTAGAGGTCTCTCTGCTTAATGCGGAGGCTCAGGAGGCCGACCAGGAGCAGCCTGATGCATATGAGCAGCAGCTGCACACTGAGCACGGTGCCGGAGACTGCAGCCCGCCCTGCAACACAGAGTGCAACGTCACACTGGGTGAGGAGCAGCAGAGGAAGTCTGAGCAGCTGCAGGCTCTCTCCCAGACCCACAAAGAGGCCCAGCAGATGCTCACAGAGCAAATGGAGAGGCAAAGAGTTGCCCATGAGGCAAAGGTGGAGGAGCTGATGGTGGCACTGTCTGGAGCCCAGCGGGACCTGGAAAACATGCAGCAACAGCACCTCGTGGAAGTGCAGGAGTGGCAGCAGAAACTGGCCCATCGGAGTGCCGAAATGGAGGCCAGGCTGGCAGAGGAGAAGCAGCACTGCGAGATCCTGTCCTCTGAGCTAGAGAGCGCCAGGATGCAGATGCAGAGCCTGGACCTCAGCTCCCGCTCCCTGCTGTGCAGCGAGAGTGAGAACAGCTTCCTGCAGCCCCCTACTGAAACAGACAACACTAACAGCCCCCCTGCCCAACCAGACCCTCACCCGCTGCTGCCTGTGATTCAGACAGAGGATGAATGGCACACGGATGCAAACCAGATATTCGATGGGCTTCTGACTGGAGTGGAAGTCCTTACGCTGGATTCTGACACCTCTGTACTTCAGCAGGACTTGAACGACCGCAGAACAGACGCAGAGGAGTTGCAGGCTAACCTTCTCAAAGGACAGCCTGACCAAGCAGAGCTGGAACAAAGCAGGGTAGCGGCCCAATGCTTGCAGAATGAACTTCAAACTTTACGATCGCAGTTCGATCTCCAAGAGGCCGAAGCCACTCTGAAGGCTGGCTCCTGTGCTGAGCTGGAGAGCAAGGTGCAGACCATGGCAAAGAAAAACTCTGAACTGGTGGAGAAAATGTGTTCCGCATCCCTGGAGAAGCAGAAGTTGGCAGACCAGGTGCGGGagctggtggaggaggtgggcaGCTTGCGCTCACAGCTGCAGACGACCAGGTTTCAGCTGTCCGATGTCACCGAGATGGTGGAAAGCCTGGAAATGGCCAAAGGTGGATGGGATGAGAAGTTCCTTCAGATCGAAAGCGAACTGAGGAGGGCTCGTTCTGAAAAGGCCAATTTGGAGAAACACATTCTGTCCATGGAGGCAGACTTTGATGTGGTGCAGCGGCAGACTCAGAAGCTGGATGCCGATCTCGACTCCCGTAAAAAAGCCAGTACCGCTCTCGATCAGCAGCTGGCCATGATCCAGACCGAGAGAGACCAGCTGAAAGAGGAGCTGTCCTCCTGCACCGAAGAAAAGGAGCAGCTGCATCAAGCTGCCCAGAGGTGGCGTGGAAAGGCCGAGCAGCTGGAGAAGGATGTTGTTGATGCTAAGGAACTGATAAAGATCCTTGAGGAAGATGTAAGAAATCTGAGAAACCAGAGAGATTCATCCAGAAGTCAGCTGGAAAACCTGCAAGAGGAGAAAGAGTGTGTCGTGCAGCAGCTGCAGGTTTTGGAACAGACTATTGTGCTGCTGAGCGCAGACAAAGAAGAGCTGCTTACTGAACTGACTAGAGCTGTGGAGGAGAAGAGTCTAGTGTCCAGGGAGGCTGAAGCTCTGGGGAGCAAAATTAAAACGCTGGAAGTAGAGATCTGCAGGCTGACCCAGTCGCTGGAGTCCTCCCTCTCGGAGAAGGGACAGATCGCCTCCAGGCTGAACTCTACCCAGGATGAGGTGTCCCAGCTGCGCACCGGCATCGAGAAACTAAGCGTGAGGATTAAAGCGGACGAGAAGAAGAAGCGGCACATGGCAGAAGAGCTGAAAGCTAGCCAACGTAGAGCCGACTCCCTACAGGATAGGATCGAGGCGCTGGAGAGGGAGGTTGAGACAGCCGACGGGAGCCTGGAAGACTTGGTGCTGCAGGCTGAGTCTGCCAAAGCCGACCTAGAGACCTCAGAGGCTGAGAAAGTGGAGCTGAGGAACAGGATTGAGGGAATGACAATTGTGATGGACACCCTGAAGGCTGAGAAGGAGACGCTGGAATCACAGCTGCTCCAGAAGGATGAACAGGTAGTGGAGCTGCAGTCCTGCTCTGACGCTGCTGCCCAGATGCTAGAGAATCTAAAGGAAGAGAAGAGGGAGACAGAAGTGCAACAAGAGAGCACTGCCAGAGTGCTGGAGTCTCGAGAAACTGAGATGAGAGAGCTGCTGCGCCTGCGTGAGGAGGAGTCTGAGTCCGCCAAGCTGAGGGAGCAGGAACTGGACCGTCAGCGGGCATGTCTGGAAACTGAAAATACGCAGTTGTCCCAGAGGCTGCAGGATGCTGAAAGGTCCCTGTCTGACCTGCAGACAGAGAGTCGCCTTGTGTCTGAGGACTGTGTGGCTAAGAGCACGAGGCTGAGCGAGACCCAGCAGGAGAGGGATGGTCTTCAGCATGAGGTGGCCACTCTGGAGGCGCTGTACCAGGCGGCGCAGGAGAAACTGCAGGCCCTGGAAGCGGAGAAGGAGGTGCTGGAGAAGGACAGTGTCTGCCTGCATGCTGCGGTGACGGAGCAGGAGCAGAGTGCACGGCAGCGGTCAGAGGAGATGCAGGTGACGATCCACTCCCTGGAGGAGAAAGTGCAGGAGCACCAGGCTGAGGCTGAGACTCTGAGACAGAGGACCACTGAGCTCAGCGACGAGCGGTCTCTGGAGGTTTCGGCCTCTGAACAAGAGAAGCTGAAGAGGAGCCTGGCAGCTTCGCTGGACAGCATCGCTGCGTTTCAACACACAACCAGGGACATGGAAGCCCAGCACCAGGAGAGGCTAGCAGAGCATGAGAGAGTGAGGCAGGAGCTGCAGAGGGAGCTCTCCACAGCCCAGGAGGAGAACAGCGCCAGTCAGCAGGAGATGGATGGCCTGAAGTCCAGCAAGGAAGAGCTGAACTCCCTTCTGAAGGAGAGCGAGCGGAAGCTGGAGCAGTTCAGCACAGTCAAGGTGCCCGAGCTGCAGTCTAGTCTGGCTCAGCTCACTAAGGAGAGGGACTCTGCTCTCAGCAAGATGCAATTGTGGATGAAGTCCTGCAAACAGGTACAGCAGGAGAAGGAGGCCCTACTCACCGAGAGCAAGCAGCAGGAGGAGAAGCTGGCCAGACTGCAAGCCAGCAAGAGCCCAGGCACTGACGGCAATGTAGAGTACCTCAGCATGGAGATCCAAGAGCTCACACAGGCCCTGGAGGACAAGACAAGAGAGGCAGAGGACAGCATGGACAAGTACTGTAGCCTGATGATCAGCCTGCACAAGCTGGAGGAGGCCAACGACAACCTGAGGAGTCAGCTGGCCGTGCTGACCAGCCAGACCatgccccccaaagccaaccaaTCGGGTAGCCCGGAGTCCTCTGCGGCGGAGAGAGCAGTGTCAGGTGGTCAGTCCCGACCTGCGGGGAAGAGGCAGAGAGCTGCCGGGCCTGAGGAGGGAGGCGGCCTGGCTGAGATGCAGGCTGATGGCACAGATCAGAGTTCCAGCAAGAGGCTGCGAACCGGGAGCAAGACTCCCCTAGCCGTCCGCCGCTCTGaaggggcaggagaggaggagttCAAACCTGAGGGGTTGCCTGAGCTGGTGAAGAAAGGGTTCGCTGACATCCCCTCTGGAGAGCTCAGCCCCTTCATCCTGCGCAGGACCACCGTACAGAGGTGCAGCCCTCGCCTCGCCGCCAAGCGCTCCCCGCTGGCCCAGCCCGAGACCCCGGGATACGCTGGCAAACACTCCACACAGAGCGCCAAGCACACCGCGGTAGCCGACAGGGCAGCGCTCACTCCAGGAACGCTCTCCACCATTACCAACAGTCCCAAAGCCCAGGGGTTCGACAGCCCGATCAGTGGCGCCGAGGGGAAGAGGAGCAGGAGGTCCCTGAGCACCAGGAAGTCTCCAGAGCAGAGAGAGCGCCGCCGGCAGCTGGTGGCGCCGGCGCCACTTCAAGACGAGAACTGCCAAGTACAGTGACACCAGAAAACTCCAGGTGTATATAGTCACGTGCTCAAAGACAGCAATACTTCATTTTCTACCTGCAGtattttcctgcttttatttgtatatatagacaatggacattttattttttctaagcATTTAAGTTGCAATGtcgtttttatgtttttgtattttaaatgcagatggacattttctttataGGCAACAGGTATTGAACTGATTCACTACAAAGCTGTCCCTGTCATTACTGCTCTACCACCTGACATTTCAAGTCTAGTTCGTTTTTCTAATGCTAATGTTTAATTTCGAAGCATTCTTGTGATGCGTTTGCGCTGataaatatgtgcatttgttGCACTctcagtaaaaaacaaaaaaacaaaaaaa

Function

GO: NA

KEGG:

id description
K11499 CENPF; centromere protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3865 lncRNA downstream 164376 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 845545 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 850323 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 964864 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 1062539 17041437 ~ 17042549 (-) True G2902
TU3907 lncRNA upstream 11084 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA upstream 14517 18138812 ~ 18142681 (-) True AMCG00003784
TU3968 lncRNA upstream 285575 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 314806 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 421058 18545353 ~ 18545976 (-) True G3270
AMCG00003778 mRNA downstream 77462 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003777 mRNA downstream 104274 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003776 mRNA downstream 208173 17889983 ~ 17896915 (-) True AMCG00003776
AMCG00003770 mRNA downstream 228502 17875147 ~ 17876586 (-) True AMCG00003770
AMCG00003768 mRNA downstream 314031 17789939 ~ 17791057 (-) True AMCG00003768
AMCG00003784 mRNA upstream 12238 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003782 mRNA upstream 22906 18147201 ~ 18148709 (-) False AMCG00003782
AMCG00003781 mRNA upstream 32563 18156858 ~ 18161968 (-) True AMCG00003781
AMCG00003783 mRNA upstream 39331 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003789 mRNA upstream 85406 18209701 ~ 18215100 (-) True AMCG00003789
TU3879 other downstream 160146 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2513358 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3293757 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4092067 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 4993960 13104356 ~ 13111128 (-) False AMCG00003652
TU3909 other upstream 22365 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1300668 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1319721 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1319721 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5405224 23529519 ~ 23533882 (-) False AMCG00003893

Expression Profile