RNA id: AMCG00003782


Basic Information

Item Value
RNA id AMCG00003782
length 322
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00003782
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18146660 ~ 18152381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGGCGTTTGGCTGTGCTGTGCGTTCTGGCGGCTGTGTGTGGGTCGAGAGCCCGGCCACACCTCTCACCCCTGTCCCCTGAGCTTGTGAACTACATCAACAAGATTAACACCACCTGGAAGGCTGGACACAATTTCCCCAATGCTGACTTCAGCTATGTGAAGACTCTGTGTGGGACTCTGCTGAAGGGCCCCAGACTGCCAGTGATGGTGCAGTACGCTGATGACATAAAGCTACCGAAGAGCTTCGACCCTCGGGACCAGTGGCCCAACTGCCCCACCCTCAAGGAGATCCGAGACCAGGGCTCCTGTGGATCCTGC

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0006508 proteolysis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3907 lncRNA downstream 4520 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 4520 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 206489 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 887658 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 892436 17254271 ~ 17254765 (-) True G2973
TU3968 lncRNA upstream 261161 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 290392 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 396644 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 726873 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 801063 18949772 ~ 18950252 (-) True G3374
AMCG00003784 mRNA downstream 7732 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003780 mRNA downstream 22906 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003778 mRNA downstream 119575 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003777 mRNA downstream 146387 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003776 mRNA downstream 250286 17889983 ~ 17896915 (-) True AMCG00003776
AMCG00003781 mRNA upstream 8149 18156858 ~ 18161968 (-) True AMCG00003781
AMCG00003783 mRNA upstream 14917 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003789 mRNA upstream 60992 18209701 ~ 18215100 (-) True AMCG00003789
AMCG00003788 mRNA upstream 67077 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003791 mRNA upstream 74036 18222745 ~ 18226922 (-) True AMCG00003791
TU3879 other downstream 202259 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2555471 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3335870 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4134180 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 5036073 13104356 ~ 13111128 (-) False AMCG00003652
TU4265 other upstream 1276254 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1295307 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1295307 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5380810 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5380810 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile