RNA id: TU3909


Basic Information

Item Value
RNA id TU3909
length 436
RNA type TUCP
GC content 0.50
exon number 5
gene id AMCG00003782
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18146660 ~ 18152381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCGCTTATTAGCGATGCGGAACTGAGTTGCTGTGCAGAAGGTCGGACGGTGTGCGGAGGACGGCGGAGATCTTACACGATTACAGGATGTGGCGTTTGGCTGTGCTGTGCGTTCTGGCGGCTGTGTGTGGGTCGAGAGCCCGGCCACACCTCTCACCCCTGTCCCCTGAGCTTGTGAACTACATCAACAAGATTAACACCACCTGGAAGGCTGGACACAATTTCCCCAATGCTGACTTCAGCTATGTGAAGACTCTGTGTGGGACTCTGCTGAAGGGCCCCAGACTGCCAGTGATGGTGCAGTACGCTGATGACATAAAGCTACCGAAGAGCTTCGACCCTCGGGACCAGTGGCCCAACTGCCCCACCCTCAAGGAGATCCGAGACCAGGGCTCCTGTGGATCCTGCTGGGCTTTTGGGGCAGCAGAGGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3907 lncRNA downstream 3979 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 3979 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 205948 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 887117 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 891895 17254271 ~ 17254765 (-) True G2973
TU3968 lncRNA upstream 257489 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 286720 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 392972 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 723201 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 797391 18949772 ~ 18950252 (-) True G3374
AMCG00003784 mRNA downstream 7191 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003780 mRNA downstream 22365 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003778 mRNA downstream 119034 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003777 mRNA downstream 145846 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003776 mRNA downstream 249745 17889983 ~ 17896915 (-) True AMCG00003776
AMCG00003781 mRNA upstream 4477 18156858 ~ 18161968 (-) True AMCG00003781
AMCG00003783 mRNA upstream 11245 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003789 mRNA upstream 57320 18209701 ~ 18215100 (-) True AMCG00003789
AMCG00003788 mRNA upstream 63405 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003791 mRNA upstream 70364 18222745 ~ 18226922 (-) True AMCG00003791
TU3879 other downstream 201718 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2554930 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3335329 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4133639 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 5035532 13104356 ~ 13111128 (-) False AMCG00003652
TU4265 other upstream 1272582 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1291635 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1291635 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5377138 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5377138 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile