RNA id: TU3903


Basic Information

Item Value
RNA id TU3903
length 2387
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00003784
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18135379 ~ 18142681 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGAATCTGACTTCACAACAGGAGCAGCAGCAAACAGAATTACAGACCTGGAACGTCACAGATTTCGCGTTTCCAACTTTCCAGTCATTAGGTAAAATAAGGAGAAGGGAAAAGGCACCCTGTCTGAGCACAATGGTGAAATAAGCAATTTTAAACTCCAGCCCAGATTTAGATTCAATGAGTCTTTATTCAGGTTTCATTTTAATCCAGCACTCTTTCACACAGTGGAATGTGATACAATGGGACCAGATACTAGTACAGCAGAACAGGTCCAGACCTTACAAGATCAAGTAAAcagagctttaaaaaatatatatgtacaaccgaagcttcagtttcatttttatataattacaaaaaagagGGGAGACACCTAATAAGTATGAGATTGCTAATCATTGATTCAGTAAAACAgaactttaaaatgcataatatcTAGTGCACTGATTAACAAGGTCTGTGAATATTGTCAGACTGAGGCAACGGAAGACAAACCAAATCTTGTGCATCAGAACCTGCCTTCCGTCTCTGAACCAGCAGAACTGCAAGGCTGGTTTCTATTCCTGCTCTTCTTTCACAGTTTTTCCAACACAGGCTCTCAGCAGCCCCACATTCctgaaaaaatgtgttctgCTTCTACAAGTTAACACCAGCATGGACACTTCTCTTTCTTCAGGTGCATGGTGTGACACTGAACTTGCTGAACTGAATGACTTGGCACATGGCAACAGCTCAGACTTATAAAAggaagcaagaaaaaaaaacacatacagtcAGGCCATGTGGGCTGCCTCAAAAGACCAACCCAATCTGGAAGTGCCTGGGGAAAGAACTGTCAGTTAGTTATTATTAGTTTGCTTTATTGAGGATTGTAAGAGCCTGTGTCCACATTAGTGACTTGCACGCACGCGCACAATCGCTCTGCACTGATCCAAACACACGGGGGCACTGCATTAACACTGCCCACCAGACGCTCCAGTCTTGCAACGGATCCTCCACTCTGATGGTTGGCAAAactaacaatttaaaaaagaaagtaaaacaatgaagcacaaaaaacatctttaaaaagatAGTGGTAGATTTGtaaattttaaaaaactaaaaatgtggcTAAAAACATTTGTAGTATTTGTATCATTGatgtagtagcagcagcagcaagcagTCAGTGGATAGTAATCAACTCCTATAGTCAAGCACTACAGATCAGagccagcagggggcagcacCAGCCCCACCCACAGACTCAGACAGCAGGGTCCTTCACCATGCCATATATTTAGGAGGGAGATGGGGGCTGCGATCTGCTGCATCTCCTCCTACAGCTTGGGGATCCCAGCGACGATCTCAGACTCTATGCCGCAGTGGTCCTCCCCGCGCAGGATCTTGAAGAACCCNNNNNCACCCCAATCGGTGTTCCAGGAGTTGGCAGCCAGCCAGTATGGGGTCCCGTTCTCCTCCCCCCAGCCTAGAATCTTGATGGCGTGTCCCCCCACTGCAGAGCCAGTGACATGCCGATACACGCCTACAGGAGGGCGAAACAAacaaagagggggtggggaagACGTTGTCAGTCTTTTCTGAATCAAAACAGTTTTACTCCAGAGCCACTTTGTTATTTTCAGGCAGACTGTGCGCAGCTctggtccagtccagtctagtcagATTTGTGTCTCAAATCATCAGCACCTGATGAAATGAGATTACTCAAAAGTTCAAGGTTGAATGAAGCCCTGCAGATACAGTGCAGTTGACAACGAGGACTACAGCTGTAGACTACAGGGGTCACCACAAGGGAGTGAAGAGGGACACTCACCCGACTTGTACAATAGGAAGTCCTCGTACACTGTGAACGCCCCCTCCACAGGGCCATTCTTGTACAGCTCAGACATGATCTGCTCCACCTGGGAGGGAACGCTGTAGGCTTTCTTCCCTGCAAACGAGAGAAAAACAGGTGAAACAACCACTAAACACTTTAGAAAGATTTGCCCTTAAGAAAAGCAGAACTAGGGAACTAGAAGCAACTAGAGGTTCTGTATGAGAAGCAAAGACGGCAGTTGCTGTGTGGAGAGCACAGACAAACCTCAGACCTGTGTAGGAAGGAAGAACAAGACTCATGTATTGTCACACCACGCTCAGTTGAGTTTTTGGGAACCTGTTCTGAGGGCAGTGCTGAGGGCTGAGGGCAGAACAGGATGATGCATCGGATTGGTTATTTGCCTTTAGAAGGCAGGACATATATCATGCCTTTGATTGGGTTATTTACTTATTGAAGGCAGGActtacaagtaaaaaaaaaaaaaatggggggcaaaataatacaagaattTGCAAACATTATAACAGGCTGTATTCTGGATTGCAGCCAGAGGTCTTTCATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3865 lncRNA downstream 198100 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 879269 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 884047 17254271 ~ 17254765 (-) True G2973
TU3581 lncRNA downstream 998588 17139957 ~ 17140224 (-) False AMCG00003751
TU3538 lncRNA downstream 1096263 17041437 ~ 17042549 (-) True G2902
TU3968 lncRNA upstream 267189 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 296420 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 402672 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 732901 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 807091 18949772 ~ 18950252 (-) True G3374
AMCG00003780 mRNA downstream 14517 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003778 mRNA downstream 111186 18004171 ~ 18027626 (-) True AMCG00003778
AMCG00003777 mRNA downstream 137998 17970812 ~ 18000814 (-) True AMCG00003777
AMCG00003776 mRNA downstream 241897 17889983 ~ 17896915 (-) True AMCG00003776
AMCG00003770 mRNA downstream 262226 17875147 ~ 17876586 (-) True AMCG00003770
AMCG00003782 mRNA upstream 4520 18147201 ~ 18148709 (-) False AMCG00003782
AMCG00003781 mRNA upstream 14177 18156858 ~ 18161968 (-) True AMCG00003781
AMCG00003783 mRNA upstream 20945 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003789 mRNA upstream 67020 18209701 ~ 18215100 (-) True AMCG00003789
AMCG00003788 mRNA upstream 73105 18215786 ~ 18220738 (-) True AMCG00003788
TU3879 other downstream 193870 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2547082 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3327481 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4125791 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 5027684 13104356 ~ 13111128 (-) False AMCG00003652
TU3909 other upstream 3979 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 1282282 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1301335 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1301335 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5386838 23529519 ~ 23533882 (-) False AMCG00003893

Expression Profile