RNA id: AMCG00003785


Basic Information

Item Value
RNA id AMCG00003785
length 1502
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00003785
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18276458 ~ 18279829 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGTCCAGGAGGGCAGGCGTTACTCTGTGCTCATGGCATGCATGTTTCCTGGCCGTGTCTGCGAGGCTGCTGACGGGCCCTGAAGGCGGACAGTCACCGAAATTCACGCCTCCCTCCAAACCCGTTATTGTGGACAAGACGCAAAGCGTGGCGGCCCTCAGAAGGTTTCTGAGTCCCGAATTCATTCCTCCTCGACAGAGAACAAACCCACTGAAGTttgctgtggagagagaggacaTGATCCAGAGGCGCAAAGGAGCATTCTTGCTGTAACAATGGCTGACCCTTACATCAATGGGAAAACTAACCGTTTTGTGGGCATATGCATCCAGAGGTCTGGGAAAGGCCTAGGAGCTACATTTCTCCTCAGGAACATTATAGATGGTCaagGTGTGGAGATTTGCTATGAACTTTACAACCCCCGAATCCAGCAGGTGGAGGTGCTGAAGATGGAAAAGAGGCTGGACAGTAACCTGCTGTATCTGCGTGATGCCCTGCCTGAGTACAGCACAGTGGATTTCAACATGAATCCAGTGCCCCCCAGTCCTACGGGAGAAGTGCCCGTTAACCAGGTACACACAGCACTGCTATTAGGCACCGATGTCACAAGGTCTCCTGGCAGATAagaacagtatattttaatatgattgatTTTATCAGTGGAATGTACATATTTACTTCTCAACTATTTTATGATCCTTGTCACCATTTGTAACCTTTGTTGGAGGaaggaaaatgttaaaagaTTATGGTATTTTAACTGTTCATATGCTTAACTTCGTTCTGCATTAAAAGCATATTTCAGTAATGGAATTGTGGATGTACAGTAGTTCATCAGAATtactcaaattaaacatttaaaccgCAACACCATGTAATTTCCCTGGCTAGTGAATTAAATTTAgttcattcttatttatttgggtGGTATACACAAGTAGATAATCAGTTTGTGTTCCAGATGCAAGTGAAAATGAAGCCCAAGCCATGGTCCAAACGCTGGGAGCGGCCTAAGTTCAGGATCCAGGGAATCTGCTTCGCCAGCTGCCTGACGCCAGAGCAGATTAAACACGCCAAGAAGTGGGATCAGCCGTGGCTGGAGTTTGACATGGTGAAGGAGTACGATACCACCAAAATAGAGGAGAAACTCTGGGAGGAGGTTCagaggaaaatgaataaataaactgatacTGAGCTCTGACTTTGCCACTCAAGGCTGGAGGAGGATGCATTCAGCGGAGGGAATCACAGTGGCACCAGACAGTCTAAGGACAGTGCAGTTGGTCCTAAACATGTTTCTTCTGGTAGCTACACTGCAGAACAACCACAATTGGTTTCCACCTCcagacattaaaataacatgcttGTTTTGTGTAACCACTGGTTGTACTGGCTCTCCAATGCCCATTTCTGTATATATGCTGTCAAAGTCTTTACTGGTCTTGTTAAGTAGAAgagtttaatattaaaaaccatAATAAACATTTGTCAAACCa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02884 RP-L19, MRPL19, rplS; large subunit ribosomal protein L19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 1020008 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 1066417 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1233894 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1342438 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1677129 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 158977 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 265155 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 665753 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 669925 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 671423 18951252 ~ 18971124 (+) True G3375
AMCG00003787 mRNA upstream 67661 18202437 ~ 18208797 (+) True AMCG00003787
AMCG00003786 mRNA upstream 76930 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003779 mRNA upstream 137084 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003771 mRNA upstream 305868 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003775 mRNA upstream 326319 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003790 mRNA downstream 9071 18288900 ~ 18320263 (+) True AMCG00003790
AMCG00003798 mRNA downstream 68062 18347891 ~ 18348131 (+) True AMCG00003798
AMCG00003797 mRNA downstream 68306 18348135 ~ 18349366 (+) True AMCG00003797
AMCG00003795 mRNA downstream 118426 18398255 ~ 18419500 (+) True AMCG00003795
AMCG00003800 mRNA downstream 343050 18622879 ~ 18668138 (+) True AMCG00003800
TU3794 other upstream 124144 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 133825 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 592470 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2236818 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3856726 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 1088364 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3269372 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3466021 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 3642807 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 5430409 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile