RNA id: AMCG00003786


Basic Information

Item Value
RNA id AMCG00003786
length 1830
RNA type mRNA
GC content 0.65
exon number 7
gene id AMCG00003786
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18194283 ~ 18199528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCCGCACCGGGAGAGGTGCTCGGCCTGCGAGCGGAGCTGCCCCCGTGGGACGTGCCCGTGACCTACAGCCTCGTGCACTGCCTTCTGGTTGGCCAGCTGTGGTGGGCCGGGTGGGTCCTGGGCCTGTCACTGCCGGCGGTTGGGGTTCAGGTGCTGAGCTTCCTGTGGTTCCTGGCCGACGGAGACAAGAGGAAGGGGAGATTATTTGTGGTGCACTGCCTACAGCTGGGGATCTACAAAAGGTTGTGGGACTGTGCGTGCTGTGCTGGGCGGCGGGGTGCGGATGAGGAGCTGGGTGTGGCCATAATGCGGAAGGCTGATGTGTCTGCGCTCCGCCTGCTGGAGGCGCTGCTGCTCTCCCTTCCCCAGGCGCTGCTGCACACCTACCTGCTCCTGAGCAGTGATGCTGGCCTGCTCTCCACAGTGGCGGCGTGCAGTGCTGCGTGCCTGCTGTCCCTGTGCTGGGCGCTGGTCCTGTACAGCTGGGCCTGTGTGCTGATCCGACCTGGGCACCTGGCCTTGCCCCCGGCTTCACTGCTGTGCCAGCTGCTGTGGAGGGTGGGCACTGTGGGCGCCAGGGTGGTCAGCCTCGCCTTCTTCACCAGGGTGTTCCGCTGGTGGGTCTACCCAGTGGCAGGCCTGCACTGGCTGACCGCCTCCTTCTGGCTGGTGTCCCAGCAGACGGACATCTGCCCTGGGACGTGGCGCTGGCGTCTGTGGAACGCGGTCATGGGTGTGGTGCATGTCTTCTGCTTCCTCAACTTGAAGGACGGCCCCTCCCGCTTCCGCATGGCCGGGTTCTACGTGGTGATGCTGCTGGAGAACACCACCCTGGTTCTGTCTGCCTCCGACTTCCTCAGCGCCGCATCCTGGGACAGCGTGGGGGTCCTTTCAGCCATGCTGGGAAGCTTCCTCCTGGGCATCTTCTCTCTGGTGGTGTATTACCACTTCCTTCACCCCAAGTCCACAGAGATCTCTCACAGCCTGTGGGGTGGCCCAGGgggcagtgcatgctgggagaagGGTGAGTTGTCGTTCTCTCTGGGAGACAAGATGGCAGCCGCTCCCCCCCTGCACGTCACTGGCAGTTTGTCTCTGAGCGGGCTGGCCGGCTCCCTACTGGGGCCCCCGGGCAGCTACGGCTCGGAGTCCCAAGGTGAGAGTGGGCACCACCATTGGCTGCTGCTGCGCTTGGCACTGAAGACAGGAGACCGGGGCAAGATCAGCCAGGCCTACGGGGCGGGGGCGGTAGAGGCCATTCTAAATGTGGAGCTGTACCACCCCGAGACAGATGATATGTCCTCTCCGGCCTCCGACTGGGATCATGGCATTGTCCCCTTCACGGAGGAGTGGAGGGAAGATCCGCAGGGGCCTGACCAAAAGCCCTCCCCTGAGGATGAGCAGCAGGGGGAGCAAGAGGAGGAGAGGACAGAGCTGGGCTCCCCGCTGGACTCCCAGGAGTTGGAGTTCCAGAGGGGATCCCCGGAAGGGAAGTCAGTGCTGGGGGACAGTCCCGAGCTTAACGTCTGTCCCACCGAGTCCAGCTCTACCCTGTACTTCAGCGCTGACCCCCAGTCTCCCAGCAGCGCCAGCAATCCGGGGCTAGACAGAGACGGTGGGGGGGACAGCGTGGCCGAGCTCAGCCCTATCTCCAGTGAGCCCGTCGCCCTGCGGGGGGGCAGGGTCTGGCTGGGCAGGGCCGAGCCACGCTTCACCTCCACCCCCAAACAGGAGACCAGTCCCCAGGAGCAACAGGGCACACACATGGCAGGGGCCCGCAGACAGCTGCTGCcctggaggagagaggaggcGGGGCACTCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 937833 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 984242 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1151719 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1260263 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1594954 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 239278 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 345456 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 746054 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 750226 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 751724 18951252 ~ 18971124 (+) True G3375
AMCG00003779 mRNA upstream 54909 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003771 mRNA upstream 223693 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003775 mRNA upstream 244144 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003774 mRNA upstream 255385 17933862 ~ 17938898 (+) True AMCG00003774
AMCG00003772 mRNA upstream 278220 17899908 ~ 17916063 (+) True AMCG00003772
AMCG00003787 mRNA downstream 2909 18202437 ~ 18208797 (+) True AMCG00003787
AMCG00003785 mRNA downstream 76930 18276458 ~ 18279829 (+) True AMCG00003785
AMCG00003790 mRNA downstream 89372 18288900 ~ 18320263 (+) True AMCG00003790
AMCG00003798 mRNA downstream 148363 18347891 ~ 18348131 (+) True AMCG00003798
AMCG00003797 mRNA downstream 148607 18348135 ~ 18349366 (+) True AMCG00003797
TU3794 other upstream 41969 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 51650 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 510295 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2154643 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3774551 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 1168665 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3349673 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3546322 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 3723108 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 5510710 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile