RNA id: AMCG00003787


Basic Information

Item Value
RNA id AMCG00003787
length 1466
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00003787
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18202437 ~ 18208797 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAAGCGACACGGCGCATGCGCTTGAGGAACTgcagaaaactttttttttttttttggagttcAGTGCTCAACTTCGTAGAAAGTTTTTGCATACAGAAAAAGACGGAGAAAAAACTAAGCACGCCGAAATGGCTTTTCGGAGGCGAAACAAGAGTTATCCGTTCTTCAGCCAGGAGTTTCTCATTCAGAACCACGCCGACATCGTGTTTTGTCTGGTGGTGTTCATCCTGATCGGGCTGATGTTCGAGGCGACTGCAAAAACAGCCTTCTTGTTCATCCTGCCCCAGTACAACAGCAGCATTTCCATACCAGAAGGGGAGGTGTCTGTCTATCACTGTGGTTGGAGGGACTGTGTGACAATCCTGTTCTACTTCCTCATTACCATCATCCTCCACGCGGTCGTTCAGGAGTATGTTCTGGATAAGGTGAACCGGCGGCTGCATCTCTCCAAGAGCAAGAACACCAAGTTCAATGAGTCGGGgcacctgtgtgtgtttcacctGGTGTCGTCGCTCTGGAGCCTCTACATCCTCATCACAGAGGGGTACCTACTGAACCTGAGCAGTCTCTGGGAGAACTACCCTCACGTCCATCTGAGgTTCCAGGTGAAATTCTTCTACCTCTTCCAGATCGCATATTGGCTCCATGCGCTGCCTGAGCTGTACTTCCAGAAAGTGAGGAAGGAGGAGATTCCTCGGCATCTGAAATACATCTCGCTGTACCTGCTGCACATCAGCCTGGCTTACCTGCTCAAtcTGACGCGGGTGGGGCTGGTACTGTTGTTCCTGCAGTACCTGTCTGAACTGGGCTTCCACGTGGCCAGACTGTTTTACTTCACAGACGAGAGTCACCACAAGCTGTTTGACATGTGGGCGGTGGGATTCATCCTGACACGCATGGTGACACTCACTTTGTCCGTGTTGGCTGTGGGCTTCGGACTGGGCCGAGTGGAAAGCCAGGGCATGGACTGGGAGGCAGGGAACTTCAACACTCTGCCACTCAGGATGGCCGTGCTGCTGCTGGTGTGCCTGACGCAGGCCTGGCTGCTGTGGAAGTTCATCCGGTTCCAGCTGCGGCGCTGGAGGGAGTACCGACAGGAGCAGGCTGCCCGTCGCCGCAGTGCCACCCGCCAGCCTGCCAGGACAGTGAAGAGTGGACACCATGAGAACGGAGTGATCAAAGCAGAGAACGGTGCCTCGCCTCGTCCCAAGAAGATCAAGACGCCCTAGAGCTGCCCCTGCTGCCCGGCTGTGTGCTCGCGCCTGGACTCGCTCCAACGGAACGGAACAGAAAAGGAAACCGGTTTTGGTCGCCGCGCCCCCCCCCAACTGGACACTGAACACGAGGCGGCCATGACTGCCATCGGGCCGTGGCGCAGTATTGGGAAACGCCCCTGCCCTTTCAAAGCCCCAGACTCTCGCCTTCACCCCTGAGCAGTATTCCTCCACGCTGACTagctgccc

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 945987 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 992396 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1159873 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1268417 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1603108 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 230009 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 336187 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 736785 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 740957 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 742455 18951252 ~ 18971124 (+) True G3375
AMCG00003786 mRNA upstream 2909 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003779 mRNA upstream 63063 18131919 ~ 18139374 (+) False AMCG00003779
AMCG00003771 mRNA upstream 231847 17954298 ~ 17970590 (+) True AMCG00003771
AMCG00003775 mRNA upstream 252298 17942587 ~ 17950139 (+) True AMCG00003775
AMCG00003774 mRNA upstream 263539 17933862 ~ 17938898 (+) True AMCG00003774
AMCG00003785 mRNA downstream 67661 18276458 ~ 18279829 (+) True AMCG00003785
AMCG00003790 mRNA downstream 80103 18288900 ~ 18320263 (+) True AMCG00003790
AMCG00003798 mRNA downstream 139094 18347891 ~ 18348131 (+) True AMCG00003798
AMCG00003797 mRNA downstream 139338 18348135 ~ 18349366 (+) True AMCG00003797
AMCG00003795 mRNA downstream 189458 18398255 ~ 18419500 (+) True AMCG00003795
TU3794 other upstream 50123 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 59804 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 518449 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2162797 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3782705 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 1159396 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3340404 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3537053 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 3713839 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 5501441 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile