RNA id: AMCG00003789


Basic Information

Item Value
RNA id AMCG00003789
length 2157
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00003789
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18209701 ~ 18215100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTTGCTCAGACGGCGCTTCACGCACTGACGGCACCGCACAGCCATGGCTTTCCACCGGACCCACGGGCTGCCCTTCCTCCCCGGGAACAGCTTCCCGGACCCCGCGAAGTCTGCATTCCACCGCTCCCAGACGCTGGACTACAAGAACGGTTACGCCCTGCCACGCCGGCCCCGCGTTGGCATTGGACAGGACCCCCTCCTGGCCAACCAGCTCTCCCAGTCTGAGCTGGACCAGCTGGCCAGCCTGTATCCTACACTGACCTACGGACAGCCTCGCCCCTCTGCCCCTTCAGACTTCATCCCTGCACATGTCGCCTTCGATAAGAAGGTGCTGCGCTTCGACGGGTATTTCCAGCAAGAGGTGCTGGGGTCGCCAGACGAGCAGTACCGTGTGCGGCCCGTGGTTGTCTTCTACTACCTGGAAGACGACAGCATGGCAGTGGTGGAGCCGGCCCAGGAGAACTCGGGGCTGCCCCAGGGGAAGCTCATCAAGAGGCAGCGGCTGCCCAAGAACGACCAGGGCGATCACTACCTCTGGACCGACCTGAACCGGGCCTCAGACTTGTGCATGTACGGCACCACCTACCGCCTCACACACTGCGACGCCTTCACGCAGGAGTTCCTGGAGAGCCAGGGGGTGGAGCTGAACGAGCCAGAGGAGATCCCTGCTGACCCCTACACTGAGCGCCGTGCCCAACCCCCGCGCTCCTACGTCACCCCGTCTGACTTTGACCGACTCAGGCAGTTCCTCACCATGGACCGCAAGGTCCTACGTTTCTATGCGATGTGGGATCACTCGGACAGCCTGTATGGGGAGACGCGGGCGGTCATTGTCCAGTACTACCTAGTGGATGACTCTGTGGAGATCCGTGAGGTCCACCAGCCCAACAGTGGCCGCGACCCCTTCCCTGTGTTACTGAGGCGACAGAGGGTGCCCAAACACACCCACGCCCCTGCTAGTGAGGAGAcaaACTCCTTCCCCACATGTGTGCTGGAGATCTCAGACCAGGAGGTGAGGGAGTATTTGTCACCCAGGGACTTCAAGATCGGAGAGACCATCACCATCATGGGCCACCGCTTCCTCCTGTACAATTGTGACAAGTTCACCCGTCACTACTACCAGGAGCAACTGGGGGAGACCCATCCGGCGCCCCTCGAGGTCAACAAGACACAGGGCGAGGAGGCCAAGATGGACATTCCTCCCTACAATGGGTTTGGTTCCCTGGAGGACTCACTGCAGAACTGCCTGTCTCTCATCCCCGAACCACCGAAGAAGGACCTGATTAAGATGTTGGAGAATGACCACAAAGTGCTGAGATATGAAGCCAGACTGGACTCCCAGAACCCCCAGGACAACGGCCGTCGCTTCGTCCTTTCTTACTACCTGGCAAACGACATGATCAGCATCTTTGAGCCGCCGGTCCGGAACTCTGGAATCATCGGGGGGAAGTTCCTGGAAAAGGCCCGCATCCCCAAACCGGGCAGCACCATGGATAATCCCATATACTATAGCCCAGCGGACCTCTTCATCGGAGCCAGGGTGGAGGTTTTCGGACATCGTTTCATACTAACAGACGCCGACAGGTACGTCTTGAACTATCTGGAGACGATCTCAGAGCACATCCCAGAAGAGACCTTGAGCTCCCTGCGCCAGAAGCTAAAGGACATGCCTGAGCACCAAAGCCAGCCCGatgAACCCCAGACAGTTtaaacacacagctgcagcacaCAGGAACACCGCCATGCTGGACTTGTGCTCTGCCCCTCTCCCCCTTCACTGCATCTCTCAATATCCTGATCCCACTTTCATTGCCTTCTGCCAAGGCCTGAAATAAACTGATTTGCTGTATTCGGAGGGGATTGTGTGTCATCAGTTTATTTAGTAGAGAAACATTTTACTTCACTTCAAGTGTTAAGGTTAAAAAGGGTCTGCTTTTACAAAACTGGGAATCTTTGTTCAGGTTTAAAGCAGAGCCCTCACTTCAAATTGAGTATCTCACGTGTGGCTGGACGGTGATGCAGGGGGGATTATGGACTCGCAGCACAGCGGAAAGGTCAACAAGGTGACCTGCTGAGTGTGACCTTTACCCTCAAACTGACTTCCCATGAAATTGAAACCTCtgcatgacaaaaaataaattccagtGAACTTGAA

Function

GO: NA

KEGG:

id description
K23029 EFHC1; EF-hand domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3907 lncRNA downstream 67020 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 67020 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 268989 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 950158 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 954936 17254271 ~ 17254765 (-) True G2973
TU3968 lncRNA upstream 194770 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 224001 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 330253 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 660482 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 734672 18949772 ~ 18950252 (-) True G3374
AMCG00003783 mRNA downstream 33997 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003781 mRNA downstream 47733 18156858 ~ 18161968 (-) True AMCG00003781
AMCG00003782 mRNA downstream 60992 18147201 ~ 18148709 (-) False AMCG00003782
AMCG00003784 mRNA downstream 70232 18136533 ~ 18139469 (-) False AMCG00003784
AMCG00003780 mRNA downstream 85406 18105088 ~ 18124295 (-) True AMCG00003780
AMCG00003788 mRNA upstream 686 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003791 mRNA upstream 7645 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003793 mRNA upstream 32955 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003792 mRNA upstream 65023 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003794 mRNA upstream 106760 18321860 ~ 18384752 (-) True AMCG00003794
TU3909 other downstream 57320 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 264759 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2617971 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3398370 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4196680 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 1209863 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1228916 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1228916 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5314419 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5314419 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile