RNA id: AMCG00003792


Basic Information

Item Value
RNA id AMCG00003792
length 2376
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00003792
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18280123 ~ 18287152 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttTAATAAGAAACCAAGAAGAAACTTCCGCAGGAGGAAAAACGAATCGAGCGAGGAAGATGAGCGGACAGAGGAGGCTAACGCCGAGGTGCAGGTCTCGGCCTCCCCGCCACCGCCAAAGCAGCAGAGCCGCGGAGTTTCCTGCAGCTCGCTGCGGCACTCGCCCAAACCAAAGACGGGATCTGACGCCGAGGAAGATCAGCAACATTTACACGAGAATGACACGGAAACGACGGTGGATGAAACGATAATCGACACTGCTtcgaaaaatgaaaataataggACAAATCTGTTGAGTTTTGCCGATGAGAAAGAGGTGGACGGAGATGGCTTTCAAGTGAAGAAACTGACTGACAGGGCTGTGGTGTTCAAGGCAAGGCTGAAGCAAGACCGCAATCCTGCTGCAGTGACACAGTACACAGGCCAGGGGAGTCCCGTCCCCGTGACGGCATGCGAGCTAACTGAGGCAGCAGGAGAAGGATCTTCTGATGGAGATGATGGTGATGCATCCTCTGAGACTTCTGCTTCATCCAGCTCTCGAACCACTGGCCCAGATGACATCCCCGACTCTCGGCAGATTCAGGCTGCGAGGAAACGGCGCCAGCTGGCAAGAACAGGGGGTGACTACATTCCTCTGGATACCACGCAGCGCGGCAGAGCAGAGCTGaggggtgaggaggaggaggaggtagaGGACAGTGAGGATGAACCCGATGATCACGAGCGCAGAATCCCTTTTGCACCCAAACCCAAATCCCTGAGGCAGAGGATGGCTGAAAAGATGGGCGAAAGAGGTGAGGGTAGTGGTGGGAGTGACAGTAACAGTGAGAGCTCATACGGACAGGAAGATGAAGATCTCTGGGAGGAACAACAGATCGGGAAAGGAATCAAGAGACCTCAGAAAGGTGTGGTGGCTCCTGTGGTGGGGAAgcaagtgaaagtgaaagttgATCCCTCTGCATCCCTTTGTCCTGTGAGTCTGGATATTATAAAGAAAAGACTTACAGAAAAGCTGGAGTCCCTGAGGGAGGTGCATCGGGCTCACGAGGCTGAGCACCGGAGAATGCAGCTGGACATGGAGAGCGCCAGGGCGGccctgcagcagctggaggaCACGACTGCTGATCAGTGTTACCGCTTCTATAAAGACATGAAGCTGTATGTCCAGAATCTGGTGGACTGTCTTACTGACAAGATTGTGATCATTGACCGAGTGGAAGCGGAGCTGCACTTGCTGCTGAAAGAAAGGGCTGAAGCTCTGTGGAGTATCAGGAGGGAGGCAGTCAGGGAGCAGGCCTCTTCCCTTCAGCAGCTCACCTTGATGGAGGTCCTGGCAGGCCAGGGCAGGAGCAGGGCAGCGCTGAGGAGCTTCACCCTGACCGGGAGGCACGCAGCAATGAGACCCAGTCTGAGGAGCAGACGCAGCTCCTTGTCAGGAGAGGGGCCTTGTCTTATATCCCTTACTCAGTTCTGCATGTTATATTTTCCAGGTCAAATACTAAGCAAGTCTCAAGAGATATTTGAGGACGTACAGGAGGACTTCTATGATGTCAAGAAAATCCTGTCTAAATTTGATCAGTGGAAACTGCGCTTTCCTGACTCCTACTACAGTGCTTACATCGGGCTGTGTCTGCCCAAGCTGCTGGGACCCTTAATCCGACATCAGCTGATTGGTTGGAATCCCCTCAAGGCCGAGGGTGAAGATTTTGAGGCATATCCGTGGTACCCAGCGGTGGAGGAATTCTGCCACGGTCAAGGATATGAAGAGCCCGAGGCTGCGGATATAAAGACTCTGCCTTCGATTGTAGAGAAAACCATCCTTCCCAAGATCCAAGGCTTTGTGGAGAATGTCTGGGATTCTCAGTCCTCAGAACAAACCGAGTGTCTGGTGAATCTGTGCAGGAGACTGCAGGAGGACTATTCTGTGCTCACCAGCGAGCTGAAAAAAACAAGCCAGCTTCTAGGTAACATTACCCTGTGGGACGGCCTGGTCCCAGAAGACACCATTAAGGAACTGGGGCTAGACAAGCTCCTGAACCGCTACATAATGATGACTCTGATGAACACCCTGCCTGACGGGGACAATGTGGAAAGATGCAAAAAGGttccttttcatGTAGCTGCCTGTTTTCCAAAGCCCTGGTTTGCAACAGTGGACACCAGGTCTTCTATTCCCCAGTTGCAGAACTTCAGCAATCACTTGCTTCAGACTGCGCATTCACTGAGTAAACACAGCGCTGACCCCAGAAACAGGGATCTTGTAGTCGATATTGTGACAGTTCTGGGGAACATCAAGGCACTGGACCATGCAGCAGCTCTGATTGAGGAATGCCCTTATGAAGACTTGAAGACTTCTCTCCCCATCAGCCAATGA

Function

GO: NA

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3907 lncRNA downstream 137442 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 137442 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 339411 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 1020580 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 1025358 17254271 ~ 17254765 (-) True G2973
TU3968 lncRNA upstream 122718 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 151949 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 258201 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 588430 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 662620 18949772 ~ 18950252 (-) True G3374
AMCG00003793 mRNA downstream 4666 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003791 mRNA downstream 53201 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003788 mRNA downstream 59385 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003789 mRNA downstream 65023 18209701 ~ 18215100 (-) True AMCG00003789
AMCG00003783 mRNA downstream 104419 18163626 ~ 18175704 (-) True AMCG00003783
AMCG00003794 mRNA upstream 34708 18321860 ~ 18384752 (-) True AMCG00003794
AMCG00003796 mRNA upstream 148135 18435287 ~ 18437960 (-) True AMCG00003796
AMCG00003801 mRNA upstream 396230 18683382 ~ 18690727 (-) True AMCG00003801
AMCG00003810 mRNA upstream 496496 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003806 mRNA upstream 592383 18879535 ~ 18889212 (-) True AMCG00003806
TU3909 other downstream 127742 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 335181 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2688393 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3468792 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4267102 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 1137811 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1156864 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1156864 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5242367 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5242367 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile