RNA id: AMCG00003794


Basic Information

Item Value
RNA id AMCG00003794
length 1428
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00003794
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18321860 ~ 18384752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTAGTTACGAGCTGCAGGGACCGCAAACACAACTACGATTTGCACACCCAATGGCAGCACTTTGCGCCAGGGTACCTGGTCTGGCTGTTCAACGTGAAGCGGACAGCATCTCCACCGGCCGTCACGCTGTCAATCCCACGATCCTGCTACAAAGTCACCCCACAGCTGCAGCCTATTTGCCCTATAGAAAGCAGATTGACTCCTCAACTCCATGAGCAAATCCCCCTGCGAACTCTGCAGTACAAGCGGGGTGTTCTGCACGAGCTCCGCAAAGGGAACTCCACAAAAGAAAAGTTTAGAGTTCACAACCTGTTGCAGCAACTTCCTCGGGCCATCATCATTGGAGTGCGAAAAGGAGGAACAAGAGCACTTCTAGAGATGCTGAACCTACATCCTGCTGTGGTCAAAGCCTCACAGGAAATCCATTTTTTTGACAATGACCAAAATTATGCCAGGGGTATCGACTGGTACAGAGGAAAGATGCCCTTTTCCTTCCTTCACCAAATCACCATTGAGAAGAGTCCGGCCTACTTTATCACTGAGGAAGTCCCAGAGCgaatttttaaaatgaactcaTCTATCAAACTATTAATTATTGTGAGGGAACCCACAACAAGAGCCATTTCAGACTACACTCAAGTTCtggaaggaaaggaaagaaagaataagACTTATTATAAGTTTGAGAAGCTTGCCATGGATACTAACACCTATGAGGTTAACACAAAGTACAAAGCTGTGCGAACCAGTATTTACACCAAACATTTGGAGAGGTGGCTGAAATACTTTCCTATTGAACAGTTTCACATTGTAGATGGAGACAAACTTATAACCGATCCTTTGCCAGAGCTGCAGCTTGTAGAGCAATTTCTAAATCTCCCTCCAAGGATTAGCCAATATAACTTATACTTCAATGCTACCAGAGGGTTCTACTGCCTGCGATATAACATTGTCTTTAACAAGTGCCTGGCAGGGGTGGGGGACGGAGCGGGCGTGGGCACTTGGCTATCATTAGCTGAGCTGCTGGCTAACAGCACCGATGTAGCATTGCGAGCCCTATTAACCAGAGGAATGGCCTTTGGGACAAACGATGCCCTGCGCCGGGTAGCATCCCCCCCATTTCCCTACCGAGAGGCTGGCACCAGGTGCTTCACTCACACACTCGCACTCAGCCCCGGCGACACAGCCGTCCTGAGCCGCGTCTCCGGGACGGGCCGCTCTTCCTGGCCGCACTCGCCGAGAAGCTTCTCCGCGCAGAGCCCGTCCCAGCGCCGCGTCTCCGGAGGGGCAGGTAACAGCGGCGTCACAGCCCGGCAGCTCAGGCAGCGGCGCCGGGAAAACCGCCGTCCCGGGCGGGCACGTCCACTGGCGCTGCTCGGTGAATCCCCACCCGGGCTGTGTCACATCACTGGCTGTGACTGA

Function

GO: NA

KEGG:

id description
K08104 HS3ST5; [heparan sulfate]-glucosamine 3-sulfotransferase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3907 lncRNA downstream 179179 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 179179 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 381148 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 1062317 17257937 ~ 17259543 (-) True G2972
TU3620 lncRNA downstream 1067095 17254271 ~ 17254765 (-) True G2973
TU3968 lncRNA upstream 25118 18409870 ~ 18418066 (-) True G3257
TU3978 lncRNA upstream 54349 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 160601 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 490830 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 565020 18949772 ~ 18950252 (-) True G3374
AMCG00003792 mRNA downstream 34708 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003793 mRNA downstream 46403 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003791 mRNA downstream 94938 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003788 mRNA downstream 101122 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003789 mRNA downstream 106760 18209701 ~ 18215100 (-) True AMCG00003789
AMCG00003796 mRNA upstream 50535 18435287 ~ 18437960 (-) True AMCG00003796
AMCG00003801 mRNA upstream 298630 18683382 ~ 18690727 (-) True AMCG00003801
AMCG00003810 mRNA upstream 398896 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003806 mRNA upstream 494783 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003807 mRNA upstream 508012 18892764 ~ 18912514 (-) True AMCG00003807
TU3909 other downstream 169479 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 376918 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2730130 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3510529 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4308839 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 1040211 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1059264 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1059264 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5144767 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5144767 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile