RNA id: AMCG00003796


Basic Information

Item Value
RNA id AMCG00003796
length 1237
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00003796
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18435287 ~ 18437960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTGTCCGCTTTCTTATTGGCTGGATCTCAGTATGCATGTCGTCATCGCTCGGAATGCCCATTCATCTGTGCACTTGGGCGTTGGACTCCGCATCTTATTAGCAACAAGGGAAATTTCTCCATTTTCCACCCTGTCTACAGCTACACAGTCACAAatctgggatttttttttattacttctcTTAACTTGGCaggctctttttttttttgctatttgCGCATTTTTTTCCGCTGCGACTGGACTTTGAATACCTCTAGAATAAACTTTTCCAAGCGGGGATCTTCGTGTAGATCTTGCATTTTCGAAAGAGGCTTGTGGTCTTTGTTCGTTTTTTGGATCGGTAGTGTTTCTTTGTTGGAGCGAAAGCATGGGAGCGCAATTTTCCAAGACCGCTGCAAAGGGCGAAACCGCCGCTGAAAAACCAGGAGAAGCTGCTGCTGCCTCACCTTCTAAAACAAATGGACAGGAAAATGGTCATGTGAAAGTAAATGGCGATGCCTCTCCAGCTGCTGCAGAAGCTTGTAAGGAAGAGGTTCAGGCCAACGGAAGTGCCCCTGCGGAGGAAAGTCCAAAAGAGGAAATTAAGGCGGAGACCGTGTCTGCCGAGAAAGAGAGCACAGAGGGGGACAAGGAAAATGCTGAGGCAGCTTCCCCTGCTGAGGGGGAGGGCTCCACAAAGGCTGAGGATGGGGCCACACCCTCCACTAGCAGTGAAacccccaaaaagaaaaagaagcgTTTCTCCTTCAAGAAGTCTTTTAAACTTAGTGGCTTCtccttcaagaaaaataaaaaggaaaccgGGGAGGGGGCAGAGAATGAAGGGGCAACGGCAGGGTCCACAGAAGAGGCCAAAGATGATGCAGCTGTAACGCCAGCAGCTACAGGCACAGAGGAGGACAAGCCAGCCCAGGAGGAGGCCACACCTGCTGCCAGCAGCACAGAGGAAACAAAGGAAGAGGTGAGCTCTTCACAAGAGGCCAAATCTGAGGAGACCGTGCCAGAAAAGCCATCGGCAGAGGAGACAAAAGCCACCACTGCCCCCGCTGCTGAGGAGTCCAAGCCAAAAGAGGAAAAGGCAGCAGAAGAAAAGCCAGCCGAGCCGGTCGCTGCTGAAGCCAAAACCACTGAACGGGAAACTCCAAAAGCAGAAGAACCTGCCGCTGTAACACAAGAAACTTCTGCATCTAGTTCGGAGGCTCCAGTTGCAGAAGTTGCCGAATCCGCAGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3968 lncRNA downstream 17221 18409870 ~ 18418066 (-) True G3257
TU3907 lncRNA downstream 292606 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 292606 18138812 ~ 18142681 (-) True AMCG00003784
TU3865 lncRNA downstream 494575 17935840 ~ 17940712 (-) True G3170
TU3619 lncRNA downstream 1175744 17257937 ~ 17259543 (-) True G2972
TU3978 lncRNA upstream 1141 18439101 ~ 18439510 (-) True G3266
TU3984 lncRNA upstream 107393 18545353 ~ 18545976 (-) True G3270
TU4075 lncRNA upstream 437622 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 511812 18949772 ~ 18950252 (-) True G3374
TU4124 lncRNA upstream 607847 19045807 ~ 19046205 (-) True G3395
AMCG00003794 mRNA downstream 50535 18321860 ~ 18384752 (-) True AMCG00003794
AMCG00003792 mRNA downstream 148135 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003793 mRNA downstream 159830 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003791 mRNA downstream 208365 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003788 mRNA downstream 214549 18215786 ~ 18220738 (-) True AMCG00003788
AMCG00003801 mRNA upstream 245422 18683382 ~ 18690727 (-) True AMCG00003801
AMCG00003810 mRNA upstream 345688 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003806 mRNA upstream 441575 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003807 mRNA upstream 454804 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003811 mRNA upstream 493804 18931764 ~ 18937964 (-) True AMCG00003811
TU3909 other downstream 282906 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 490345 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 2843557 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3623956 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4422266 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 987003 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 1006056 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 1006056 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 5091559 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 5091559 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035251 True 1319 mRNA 0.45 2 NC_007131.7 3316263 ~ 3319736 (-)
eurasian perch (Perca fluviatilis) TU246203 True 615 lncRNA 0.41 2 NC_053129.1 1945483 ~ 1949524 (-)