RNA id: AMCG00003797



Basic Information


Item Value
RNA id AMCG00003797
length 675
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00003797
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18348135 ~ 18349366 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGGAAACCGAAACTGTGTTTCGAACAGCCTACCATTTGGCCAAAAAGAACAGACCCTTTTCTGACCATGAGAGCCTCATTGAGCTGCAGGAATTGAATGGTATAAAGATGGGCTCAATACTTCATTCACGTTACATTGCAACACAAATAACCAAACATATTGCCAATGAGATGCAGAGCAAAATCGTCAGTAGCATAATAGCATCACCGATTAAAACATCAGTTCAAGAAGAAGAAAGCACTGAATTCATATTCCTTGAGCTTGATGAACTGGAAAATCAGAGAGCAGATGGCATAGTAGAGGATGCAGCACCTGAAGTAGGCTCACAACTTCTTCGCATTGGCAGAGTCTTGGATGTACGCTGGATGGCCAGTAGCTTTCAGACTGTTCATGCTGTTTGGACATCACTGGGAGCTCTTTTGCAGCAGTTTTTATTGGACCGTGTTCAAAGTCCTGAATTTCTTTGTGACCTTGGGCTCATGTATGACACACTCCATGAACTAAGTGTCCTGTCACAGGAGCTTCAGGCTTGTTCTACAACTCTCCTCAGAGCAGAGCATCTGCTGAAATGCACAATCATAAATGGCCATCAAACCCCAGCATCCGCCATGGTGAAGAACAAATTAAGCGACTGTGCAAGCGATTTAACTTGTGCACAGACCAAGCACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3614 lncRNA upstream 1091685 17254266 ~ 17256450 (+) True G2967
TU3591 lncRNA upstream 1138094 17208035 ~ 17210041 (+) True G2945
TU3513 lncRNA upstream 1305571 17041113 ~ 17042564 (+) False AMCG00003744
TU3493 lncRNA upstream 1414115 16868299 ~ 16934020 (+) True G2861
TU3458 lncRNA upstream 1748806 16599058 ~ 16599329 (+) True G2836
TU3977 lncRNA downstream 89440 18438806 ~ 18439666 (+) True G3265
TU3983 lncRNA downstream 195618 18544984 ~ 18545538 (+) True G3269
TU4091 lncRNA downstream 596216 18945582 ~ 18946131 (+) True G3370
TU4095 lncRNA downstream 600388 18949754 ~ 18950254 (+) True G3373
TU4101 lncRNA downstream 601886 18951252 ~ 18971124 (+) True G3375
AMCG00003798 mRNA upstream 4 18347891 ~ 18348131 (+) True AMCG00003798
AMCG00003790 mRNA upstream 27872 18288900 ~ 18320263 (+) True AMCG00003790
AMCG00003785 mRNA upstream 68306 18276458 ~ 18279829 (+) True AMCG00003785
AMCG00003787 mRNA upstream 139338 18202437 ~ 18208797 (+) True AMCG00003787
AMCG00003786 mRNA upstream 148607 18194283 ~ 18199528 (+) True AMCG00003786
AMCG00003795 mRNA downstream 48889 18398255 ~ 18419500 (+) True AMCG00003795
AMCG00003800 mRNA downstream 273513 18622879 ~ 18668138 (+) True AMCG00003800
AMCG00003799 mRNA downstream 321358 18670724 ~ 18682733 (+) True AMCG00003799
AMCG00003804 mRNA downstream 352277 18701643 ~ 18779760 (+) True AMCG00003804
AMCG00003803 mRNA downstream 435045 18784411 ~ 18799944 (+) True AMCG00003803
TU3794 other upstream 195821 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 205502 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 664147 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 2308495 16035663 ~ 16039640 (+) False AMCG00003712
TU2954 other upstream 3928403 14418516 ~ 14419732 (+) True G2440
TU4227 other downstream 1018827 19368193 ~ 19369266 (+) False AMCG00003828
TU4541 other downstream 3199835 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 3396484 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 3573270 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 5360872 23710238 ~ 23713134 (+) False AMCG00003898

Expression Profile