RNA id: AMCG00003801


Basic Information

Item Value
RNA id AMCG00003801
length 1169
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00003801
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18683382 ~ 18690727 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aCACCAACTcagcctctctccctccctccttctcctcctctcactCCCTCAGCCCTCAGACGTCTCTCATAGCTGGGAAAAATAAGATGCTGGGGCTCTTTTGCAATATCCTTCTATTAATTTTCGCACAACAGATTTCTGTGAAAGACAATGGCTTATCCACGGAGTTTAATGTTTTCTGCAGGGCACCGAGCAATGGCCAGCTGGCAGGGCCCAGAACTGGCACAGGAAGTGCCGAGCGCAGACAGGTCTGTCACTGGCCGTGCAGTTGTCGTGTCAAGCCCCCCCTGTGTGCACCAGGTGTCAGTCTAGTAAAGGATGGCTGTGACTGCTGCAAGATCTGTGCCAAACAGGTTGGAGAGGCCTGCAACGAAGCGGATGTGTGTGACCCCCACAAAGGGATGTACTGTGACTATTCTTCTGACAAGCCGCGGTTTGAGGTTGGAGTCTGTGCTTATCTGATGGCGGTGGGATGCGAGCTCAACGGTGTTTTCTATGACAACGGCCAGGCGTTTCAGCCAAATCCCTTCtacaaatgcatttgtgttgCGGGGGCATTTGGCTGCACGCCAGCCTTCACTCAGAAACCAGCTGCCCTACAGGGAACGGCTGCCAATGGTGGAAGGCCAAGCCAGTTAAGGGGTGCCAAGGAGTCGAGGAAGCATCAACAGGATACAACATACAGAGCAATGCCAGCTTACAGGGATCACCCTTTAGCAATGAAGAAGAGCTGCCTGTTCCAGACAACACCATGGAGCCCATGCTCTAGGACCTGTGGGATGGGCATCTCAGTCAGAGTgaccaacaacaacagcaaatgtGAACTGAGGAAAGATCGCCGACTCTGCATCCTGAGGCCTTGTGATACAACTATACTCAGAAATGTTAAGattGCGAAAGGAAAGACGTGTCAACCAAAGTTCCAGTCAAAGAAATCGGAGAAGCTGGTTCTATCTGGTTGCCAAAGCACTCAGAGCTACAAACCAACATACTGTGGAGTCTGCAGTGACAGGCGCTGCTGCATCCCCAATAAATCCACGATGATCACAGTCCAGTTTCACTGCGGGGACGGGGGAGACCCAGCATGGAAGATGTTATGGATCACCTCCTGTGTGTGCCAGAAGAACTGCCATGATCCCGGGGACATTTTCTCTGAACTAGGGTTTTTC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0009968 negative regulation of signal transduction biological_process

KEGG:

id description
K23090 CCN6, WISP3; CCN family member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3984 lncRNA downstream 137406 18545353 ~ 18545976 (-) True G3270
TU3978 lncRNA downstream 243872 18439101 ~ 18439510 (-) True G3266
TU3968 lncRNA downstream 265316 18409870 ~ 18418066 (-) True G3257
TU3907 lncRNA downstream 540701 18135379 ~ 18142681 (-) False AMCG00003784
TU3903 lncRNA downstream 540701 18138812 ~ 18142681 (-) True AMCG00003784
TU4075 lncRNA upstream 184855 18875582 ~ 18878573 (-) True G3354
TU4098 lncRNA upstream 259045 18949772 ~ 18950252 (-) True G3374
TU4124 lncRNA upstream 355080 19045807 ~ 19046205 (-) True G3395
TU4131 lncRNA upstream 386729 19077456 ~ 19077864 (-) True G3402
TU4132 lncRNA upstream 388707 19079434 ~ 19079665 (-) True G3403
AMCG00003796 mRNA downstream 245422 18435287 ~ 18437960 (-) True AMCG00003796
AMCG00003794 mRNA downstream 298630 18321860 ~ 18384752 (-) True AMCG00003794
AMCG00003792 mRNA downstream 396230 18280123 ~ 18287152 (-) True AMCG00003792
AMCG00003793 mRNA downstream 407925 18248055 ~ 18275457 (-) True AMCG00003793
AMCG00003791 mRNA downstream 456460 18222745 ~ 18226922 (-) True AMCG00003791
AMCG00003810 mRNA upstream 92921 18783648 ~ 18785327 (-) True AMCG00003810
AMCG00003806 mRNA upstream 188808 18879535 ~ 18889212 (-) True AMCG00003806
AMCG00003807 mRNA upstream 202037 18892764 ~ 18912514 (-) True AMCG00003807
AMCG00003811 mRNA upstream 241037 18931764 ~ 18937964 (-) True AMCG00003811
AMCG00003809 mRNA upstream 253368 18944095 ~ 18948660 (-) True AMCG00003809
TU3909 other downstream 531001 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 738440 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3091652 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 3872051 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 4670361 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 734236 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 753289 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 753289 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4838792 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4838792 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile